Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H03
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   8.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +2

Query: 614 DTRRFPWKLPSCALLFRPWPLTGYLSALSPFRET 715
           D   FP+   +C + F  W   GY   L    +T
Sbjct: 148 DVEYFPFDEQTCFMKFGSWTYDGYTVDLRHLAQT 181


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 623 RFPWKLPSCALLFRPW 670
           +FP+ +  C L+F  W
Sbjct: 148 KFPFDVQECPLIFESW 163


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 614 DTRRFPWKLPSCALLFRPWPLTGY 685
           D   FP+   +C L F  W   G+
Sbjct: 156 DVEYFPFDEQTCVLKFGSWTYDGF 179


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 571 DFCDARSGGRSLWKN 527
           D C   SGG  LW+N
Sbjct: 343 DACQMDSGGPVLWQN 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,113
Number of Sequences: 438
Number of extensions: 5042
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)