Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_H01
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 33 0.067
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 29 0.63
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.3
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 4.4
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 4.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 4.4
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 4.4
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 26 5.8
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 26 5.8
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 26 7.7
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 26 7.7
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 32.7 bits (71), Expect = 0.067
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 168 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 335
L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
Query: 336 LQGSKE 353
+ KE
Sbjct: 170 SKYIKE 175
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 29.5 bits (63), Expect = 0.63
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 520 VSWKLIALWENNKVYFKILNTERNXYLVLGVGTNWNG 630
+ +K I L++NN+ KILN R V+ VGT NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 177 QLYNSVVVADYDSAVEKSKHLYEEKKS 257
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 423 VHKLNRVFGEDKSELNWETIPDDV 352
+H + EDKS+L +ETIPD V
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPV 32
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 368 VSQLSSDLSSPKTRLSLCTSATV 436
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 249 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 341
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.4
Identities = 24/66 (36%), Positives = 31/66 (46%)
Frame = +2
Query: 326 STLAPGLQGTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATART 505
ST+AP TSSG + SS T LS T A S + F T + LPT++A T
Sbjct: 612 STVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFT-SSGFNTT-SGLPTSSAST 669
Query: 506 RQARES 523
+ S
Sbjct: 670 PSSNSS 675
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 505 KTSPRVSWKLIALWENNKVYFKILNTERNXYLVLGVGTN 621
K SP+V+WK +W + K K +++ +LG G++
Sbjct: 28 KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 154 TSESAAYRDATKRHRITIAGFIFGASSPVCYPRTNCQ 44
++ S + RDA K H++T +G + C P+T Q
Sbjct: 209 STTSYSIRDADKHHKLTTSGVTKMNITERCKPKTTIQ 245
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 399 GEDKSELNWETIPDDVPWSPGAKVD 325
G D+ E N + P +PW PG K++
Sbjct: 59 GMDEEEQN-DAQPSKIPWLPGGKIN 82
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 684 YPXGSETIDAV-DSEGHMVAVPVSADSQYQVXVTFSVQDLEVDLVVLPQSD 535
Y GS+ + ++EG ++ P+ A+S + F+++ VD+ L Q+D
Sbjct: 364 YGLGSKNFSSTGEAEGTGLSTPIIAESLKENDEFFAMEKENVDIQYLSQND 414
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 383 NSTGKQSRTMFLGALEPKLIGVLHAVHLVVSYQF 282
++TGKQ T+F GA E G+L A +S +
Sbjct: 110 DNTGKQGFTIFTGAYEGIAAGLLWASTAYISLSY 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,033
Number of Sequences: 5004
Number of extensions: 52052
Number of successful extensions: 203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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