Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G23
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    28   1.6  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    27   2.8  

>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 194 FEETVYSSIDPTQRHSNIKTAQHKNKNRTLSWLKFTSCR 78
           F+ T Y+S+   +   NI    HK +   LSW +  +CR
Sbjct: 159 FDRTKYTSMPAEEFLPNISLIGHKKEGFGLSWNRQQNCR 197


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 427 FCCWFALLNVWIRHDSGXVNKFQLRPRLHXKPDEYTFSLD 308
           FCCW++      +HD      FQ       KP  Y FSL+
Sbjct: 140 FCCWYSETMGMFKHDLYNDLTFQGSSCTAWKPWTYKFSLN 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,935
Number of Sequences: 5004
Number of extensions: 43160
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)