Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_G23
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 33 0.24
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.2
12_02_1174 - 26696869-26698191 30 3.0
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 30 3.0
12_02_0450 + 19172812-19172920,19173020-19173088,19173168-191732... 29 5.2
12_02_0046 + 12830974-12832386 29 5.2
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 29 5.2
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.2
07_03_0177 - 14770777-14772045 28 9.0
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 28 9.0
03_02_0189 - 6253659-6255380 28 9.0
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 28 9.0
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 33.5 bits (73), Expect = 0.24
Identities = 17/62 (27%), Positives = 19/62 (30%)
Frame = +3
Query: 732 PXAPXXPXXXXXXXPHXKKTXXGXXPPPXXNPPXKXPFXEXRGAXXPXXXXPXXPXXXPP 911
P P P P G P P +PP + P P P P PP
Sbjct: 1123 PPLPDGPPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPP 1182
Query: 912 PP 917
PP
Sbjct: 1183 PP 1184
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/62 (29%), Positives = 19/62 (30%)
Frame = +3
Query: 732 PXAPXXPXXXXXXXPHXKKTXXGXXPPPXXNPPXKXPFXEXRGAXXPXXXXPXXPXXXPP 911
P AP P P PPP P +GA P P P PP
Sbjct: 6 PYAPHPPPPQGGFPPQPPPMNPYGPPPP--QQPAYGHMPPPQGAPPPFLAPPPPPPPGPP 63
Query: 912 PP 917
PP
Sbjct: 64 PP 65
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Frame = +3
Query: 738 APXXPXXXXXXXPHXKKTXXGXXPPPXXNPPXKXP-FXEXRGAXXPXXXXPXXPXXXPPP 914
AP P PH + G PP PP + + P P PPP
Sbjct: 53 APPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPP 112
Query: 915 P 917
P
Sbjct: 113 P 113
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +3
Query: 807 PPPXXNPPXKXPFXEXRGAXXPXXXXPXXPXXXPPPP 917
PPP PP + P P P PPPP
Sbjct: 268 PPPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPPPP 304
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/46 (30%), Positives = 16/46 (34%)
Frame = +3
Query: 777 HXKKTXXGXXPPPXXNPPXKXPFXEXRGAXXPXXXXPXXPXXXPPP 914
H + G PPP PP P + P P P PPP
Sbjct: 60 HPQYPMPGSLPPPPPRPPSFAPENALPPSSPPPPSPPPPPPSSPPP 105
>12_02_0450 +
19172812-19172920,19173020-19173088,19173168-19173274,
19173874-19174365
Length = 258
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 916 GGGGXXXGXXGXXXKGXXAPRFSXKGXFXGGFXXGGG 806
GGGG G G G +S G + GG GGG
Sbjct: 117 GGGGYGGGGYGGGGGGYGGGGYSGGGGYGGGGYSGGG 153
>12_02_0046 + 12830974-12832386
Length = 470
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 807 PPPXXNPPXKXPFXEXRGAXXPXXXXPXXPXXXPPPP 917
PPP PP P R P P P PP P
Sbjct: 310 PPPWCVPPPPRPAPPSRRVMAPLPPYPMDPFETPPSP 346
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 807 PPPXXNPPXKXPFXEXRGAXXPXXXXPXXPXXXPPPP 917
PPP PP + + + P P P PPPP
Sbjct: 371 PPPPPPPPAVTQQQDVKTSCGPAVPPPPPPTPPPPPP 407
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/62 (27%), Positives = 17/62 (27%)
Frame = +3
Query: 732 PXAPXXPXXXXXXXPHXKKTXXGXXPPPXXNPPXKXPFXEXRGAXXPXXXXPXXPXXXPP 911
P P P P PPP PP P P P P PP
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPP-----AKGPPPPPPPKGPSPPPP 367
Query: 912 PP 917
PP
Sbjct: 368 PP 369
>07_03_0177 - 14770777-14772045
Length = 422
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -3
Query: 916 GGGGXXXGXXGXXXKGXXAPRFSXKGXFXGGFXXGGG 806
GG G G G KG F G F GGF GGG
Sbjct: 105 GGFGKGGGVGGGFGKGGG---FGKGGGFGGGFGKGGG 138
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 810 PPXXNPPXKXPFXEXRGAXXPXXXXPXXPXXXPPPP 917
PP +PP P E A P P P PPPP
Sbjct: 46 PPPPSPPPPPPLDEETLAQFP--SPPTNPSPPPPPP 79
>03_02_0189 - 6253659-6255380
Length = 573
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 328 EYTFSLDNPFDSRHYCSYIGRNHRLGK 248
+ +LD P DS HY GR RLG+
Sbjct: 501 DLVINLDLPTDSTHYAHRAGRTGRLGR 527
>02_05_0064 - 25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 328 EYTFSLDNPFDSRHYCSYIGRNHRLGK 248
+ +LD P DS HY GR RLG+
Sbjct: 963 DLVINLDLPTDSTHYAHRAGRTGRLGR 989
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,005,639
Number of Sequences: 37544
Number of extensions: 323581
Number of successful extensions: 1045
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -