Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G22
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1073 - 23760802-23761437,23761963-23762132,23762234-237624...    29   6.7  
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838...    28   8.9  
01_06_1094 - 34478538-34478624,34478860-34478931,34479154-344792...    28   8.9  

>07_03_1073 -
           23760802-23761437,23761963-23762132,23762234-23762446,
           23762531-23762819
          Length = 435

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 837 GSNGPCGXPEXFTIGPSSKGXGGLGVV 757
           GS+ PC  P  F  G S+   GGL  +
Sbjct: 40  GSDAPCDFPAIFNFGDSNSDTGGLSAL 66


>02_05_1304 +
           35581172-35581345,35582504-35582748,35583148-35583829,
           35583908-35584262,35584558-35584649,35584889-35585083,
           35585167-35585840,35586134-35586224
          Length = 835

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = -2

Query: 223 HCRSRPVXMLLYSFSSSSWLEVSADSSTTPALAASMHIAKYNEKFHFVRSLSDRLQVSNP 44
           H +  P   L Y F+S   LE   +SS       + HI        F  SL D L + N 
Sbjct: 535 HVKPPPSDQLWYGFTSMPDLEWDIESSIGDRKITNSHIGSLIGN-RFKASLRDSLVLPNC 593

Query: 43  KILRIPY 23
           + + IP+
Sbjct: 594 ESISIPF 600


>01_06_1094 -
           34478538-34478624,34478860-34478931,34479154-34479222,
           34479312-34479422,34480390-34480528,34480590-34480705,
           34480821-34480968,34481058-34481215,34481654-34481827,
           34482592-34483056
          Length = 512

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 178 RRNCTTAXSPGDYDSAVRQXLEYESQGQGA 267
           RR+   A +PGD D+A+R   E    G GA
Sbjct: 76  RRSAAPAAAPGDLDAAIRAEEEERLYGGGA 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,467,231
Number of Sequences: 37544
Number of extensions: 376854
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)