Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G21
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263     31   0.95 
09_04_0219 - 15774809-15775198                                         30   2.2  
01_03_0288 - 14714953-14715253,14716317-14716402,14716573-147166...    30   2.9  
10_08_0432 - 17875427-17875807,17877810-17879099                       29   3.8  
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072     28   8.9  
01_06_0925 - 33067106-33067280,33069193-33069517,33070757-330707...    28   8.9  

>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
          Length = 769

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
 Frame = +3

Query: 282 TDCSRSTTGTG----CSKGASPGKDCNVKCSDLLTDDITKAAKCAKKFTNVTAS-----M 434
           ++C  ++ G G    CSKG       +  C D+     TK   C  K TN   S      
Sbjct: 289 SECFNASDGQGYRCRCSKGYEGNPYLDGGCKDIDECQRTKEYPCFGKCTNTIGSYTCECR 348

Query: 435 PGTAGRTTARAPCL 476
           PGT+G  T    CL
Sbjct: 349 PGTSGNATQENGCL 362


>09_04_0219 - 15774809-15775198
          Length = 129

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 27/95 (28%), Positives = 36/95 (37%)
 Frame = +3

Query: 114 CVGSEAKTFTRCGLVHELRKHGFEENLMRNWVCLGRAREQP*HVQDEHEP*TARRTTDCS 293
           C   + K ++   L      H FE ++ +    L  AR Q     DE     A  TT  +
Sbjct: 38  CTYCDKKFYSSQALGGHQNAHKFERSVAKRTRELAAARRQ--QAADEEARRGAGTTT--T 93

Query: 294 RSTTGTGCSKGASPGKDCNVKCSDLLTDDITKAAK 398
           R  TG   S           +  DLLTDDI  + K
Sbjct: 94  REPTGNASSSYQRASPPAEARRRDLLTDDIDLSLK 128


>01_03_0288 -
           14714953-14715253,14716317-14716402,14716573-14716686,
           14716771-14717140,14717224-14717357,14717512-14717617,
           14717733-14717854,14718125-14718231,14718522-14718622,
           14719007-14719169,14719559-14719614,14720833-14721152
          Length = 659

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +1

Query: 61  SKDTIEMQK-FIIFALVVSALVLKPKRSRDAVSCMS*GSMASKKIS*GTGYVWVEHESSR 237
           S D + M+  F +  ++  A + +  + RD ++     +++  K + G  +  + H  S 
Sbjct: 319 SSDRLLMESSFNLLTVIKGASMYRQGKQRDTITDFLPPTISEFKRTFGEDFKLLHHLLSP 378

Query: 238 DTSKTNTNRKRLEGLRIVPDQRPVL 312
               T  N K + GL  VPD+ PVL
Sbjct: 379 VMLSTLRNGKIVRGLAGVPDKGPVL 403


>10_08_0432 - 17875427-17875807,17877810-17879099
          Length = 556

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 490 AAANIRQGALAVVLPAVPGIEAVTFVNFLAHFAALVMSSVRRSEHLTLQSLPGLAPLL 317
           AAA  R G +   + A+P ++ V  +  ++ F A+     RRS+ L    L G+ P L
Sbjct: 18  AAAGRRGGGIVAGMMALPEVQTVELLVAVSIFVAIHSLRQRRSQGLPSWPLVGMLPSL 75


>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
          Length = 414

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 322 LLHPVPVVDLEQSVVLRAVYGSCSSWTCHGCSRARPRH-TQFLMRFSSKP 176
           LLH + +  LE    L AV   C SW C   +   PR  T +LM +S KP
Sbjct: 37  LLHRI-LHSLELPEAL-AVADVCKSWCCAAIAAGVPRSCTPWLMSWSDKP 84


>01_06_0925 -
           33067106-33067280,33069193-33069517,33070757-33070795,
           33071188-33071395
          Length = 248

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 201 NWVCLGRAREQP*HVQDEHEP*TARRTTDCSRSTTGTGCSK 323
           NW C     ++     DE E  + +    CSRST+ TGC K
Sbjct: 181 NWTCADLTTDRV-TCGDEEERASRKVLRGCSRSTSCTGCVK 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,905,463
Number of Sequences: 37544
Number of extensions: 280128
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)