Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G19
         (1133 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   8.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -2

Query: 106 PPPPPRXLL*GX-PXXPQGXGXPSXP 32
           PPPPPR    G  P  PQG   P  P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = -2

Query: 577  GGPXPXRXXSXGXAGPRXXXPPAXS-PPXSPXPXAXXXVGXXXPXXAGPXPTP 422
            GG  P    S     P+   PP  S P   P P +        P  AGP   P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = -3

Query: 684  PPPXXXLXASXSXPXXARAPPXPTGXVXXLPXXXGXGVP 568
            PPP      + S P  A  PP   G     P   G  VP
Sbjct: 908  PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVP 946


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.143    0.465 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,527
Number of Sequences: 5004
Number of extensions: 15628
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 603631146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)