Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_G19
(1133 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 42 8e-04
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 42 8e-04
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 42 8e-04
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.12
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.12
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.12
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 33 0.49
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 32 0.86
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 1.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 1.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 1.1
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 31 2.0
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 30 2.6
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 30 2.6
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 30 2.6
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.5
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 29 8.0
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 29 8.0
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 29 8.0
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 41.9 bits (94), Expect = 8e-04
Identities = 25/89 (28%), Positives = 27/89 (30%)
Frame = -2
Query: 688 GAPPXXXPRRXXLXAXXRAGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPA 509
G+PP P + P G PP P P AG P A
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 294
Query: 508 XSPPXSPXPXAXXXVGXXXPXXAGPXPTP 422
SPP P P G P AG P P
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
Score = 31.5 bits (68), Expect = 1.1
Identities = 27/89 (30%), Positives = 28/89 (31%)
Frame = -2
Query: 688 GAPPXXXPRRXXLXAXXRAGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPA 509
G+PP P R G P G PP G P P R S P PP
Sbjct: 253 GSPPP--PPAAGSPPPPRTGSPPPPPTGSPPPPPAG-GSPPPPRAGS-----PPPPPPPR 304
Query: 508 XSPPXSPXPXAXXXVGXXXPXXAGPXPTP 422
SPP P G P G P P
Sbjct: 305 GSPPTGSLPPPQAG-GSPPPAGTGSPPPP 332
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 726 PXXPXFXXXXXGSGPPPXXXLXASXSXPXXARAPPXPTG 610
P P GSG PP S P PP PTG
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG 278
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/69 (26%), Positives = 21/69 (30%)
Frame = -2
Query: 688 GAPPXXXPRRXXLXAXXRAGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPA 509
G+PP P R + P G PP P P + P PP
Sbjct: 295 GSPPPPPPPRG---SPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT 351
Query: 508 XSPPXSPXP 482
SPP P
Sbjct: 352 GSPPTGRPP 360
Score = 28.7 bits (61), Expect = 8.0
Identities = 25/115 (21%), Positives = 30/115 (26%), Gaps = 1/115 (0%)
Frame = +1
Query: 430 GXDPRXRGAXXPPXPQRXXXXRXEVXXPGAXXXAGRPXPQSXSAXXXDPXAXGAGEXXDX 609
G P G PP P R E P G P + + E +
Sbjct: 318 GGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREG 377
Query: 610 AR-XXXGXPRGXGRGAXXXEXXXGGGPRXXXXXXEXGXXRXXAPPAAXXXXGRXP 771
R G PRG R + PR G +PP G P
Sbjct: 378 PRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPP 432
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 41.9 bits (94), Expect = 8e-04
Identities = 25/89 (28%), Positives = 27/89 (30%)
Frame = -2
Query: 688 GAPPXXXPRRXXLXAXXRAGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPA 509
G+PP P + P G PP P P AG P A
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 315
Query: 508 XSPPXSPXPXAXXXVGXXXPXXAGPXPTP 422
SPP P P G P AG P P
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
Score = 31.5 bits (68), Expect = 1.1
Identities = 27/89 (30%), Positives = 28/89 (31%)
Frame = -2
Query: 688 GAPPXXXPRRXXLXAXXRAGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPA 509
G+PP P R G P G PP G P P R S P PP
Sbjct: 274 GSPPP--PPAAGSPPPPRTGSPPPPPTGSPPPPPAG-GSPPPPRAGS-----PPPPPPPR 325
Query: 508 XSPPXSPXPXAXXXVGXXXPXXAGPXPTP 422
SPP P G P G P P
Sbjct: 326 GSPPTGSLPPPQAG-GSPPPAGTGSPPPP 353
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 726 PXXPXFXXXXXGSGPPPXXXLXASXSXPXXARAPPXPTG 610
P P GSG PP S P PP PTG
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG 299
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/69 (26%), Positives = 21/69 (30%)
Frame = -2
Query: 688 GAPPXXXPRRXXLXAXXRAGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPA 509
G+PP P R + P G PP P P + P PP
Sbjct: 316 GSPPPPPPPRG---SPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT 372
Query: 508 XSPPXSPXP 482
SPP P
Sbjct: 373 GSPPTGRPP 381
Score = 28.7 bits (61), Expect = 8.0
Identities = 25/115 (21%), Positives = 30/115 (26%), Gaps = 1/115 (0%)
Frame = +1
Query: 430 GXDPRXRGAXXPPXPQRXXXXRXEVXXPGAXXXAGRPXPQSXSAXXXDPXAXGAGEXXDX 609
G P G PP P R E P G P + + E +
Sbjct: 339 GGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREG 398
Query: 610 AR-XXXGXPRGXGRGAXXXEXXXGGGPRXXXXXXEXGXXRXXAPPAAXXXXGRXP 771
R G PRG R + PR G +PP G P
Sbjct: 399 PRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPP 453
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 41.9 bits (94), Expect = 8e-04
Identities = 25/89 (28%), Positives = 27/89 (30%)
Frame = -2
Query: 688 GAPPXXXPRRXXLXAXXRAGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPA 509
G+PP P + P G PP P P AG P A
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 300
Query: 508 XSPPXSPXPXAXXXVGXXXPXXAGPXPTP 422
SPP P P G P AG P P
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
Score = 31.5 bits (68), Expect = 1.1
Identities = 27/89 (30%), Positives = 28/89 (31%)
Frame = -2
Query: 688 GAPPXXXPRRXXLXAXXRAGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPA 509
G+PP P R G P G PP G P P R S P PP
Sbjct: 259 GSPPP--PPAAGSPPPPRTGSPPPPPTGSPPPPPAG-GSPPPPRAGS-----PPPPPPPR 310
Query: 508 XSPPXSPXPXAXXXVGXXXPXXAGPXPTP 422
SPP P G P G P P
Sbjct: 311 GSPPTGSLPPPQAG-GSPPPAGTGSPPPP 338
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 726 PXXPXFXXXXXGSGPPPXXXLXASXSXPXXARAPPXPTG 610
P P GSG PP S P PP PTG
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG 284
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/69 (26%), Positives = 21/69 (30%)
Frame = -2
Query: 688 GAPPXXXPRRXXLXAXXRAGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPA 509
G+PP P R + P G PP P P + P PP
Sbjct: 301 GSPPPPPPPRG---SPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT 357
Query: 508 XSPPXSPXP 482
SPP P
Sbjct: 358 GSPPTGRPP 366
Score = 28.7 bits (61), Expect = 8.0
Identities = 25/115 (21%), Positives = 30/115 (26%), Gaps = 1/115 (0%)
Frame = +1
Query: 430 GXDPRXRGAXXPPXPQRXXXXRXEVXXPGAXXXAGRPXPQSXSAXXXDPXAXGAGEXXDX 609
G P G PP P R E P G P + + E +
Sbjct: 324 GGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREG 383
Query: 610 AR-XXXGXPRGXGRGAXXXEXXXGGGPRXXXXXXEXGXXRXXAPPAAXXXXGRXP 771
R G PRG R + PR G +PP G P
Sbjct: 384 PRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPP 438
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.7 bits (76), Expect = 0.12
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -2
Query: 577 GGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXXXPXXAGPXPTP 422
GGP P GP PP PP + P G P GP P P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 32.7 bits (71), Expect = 0.49
Identities = 21/74 (28%), Positives = 22/74 (29%)
Frame = -2
Query: 625 PXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXXXPX 446
P GP P GGP P G P PP PP P + P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPP--PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Query: 445 XAGPXPTPXXXPXG 404
P P P P G
Sbjct: 766 GGCPPPPPPPPPGG 779
Score = 28.7 bits (61), Expect = 8.0
Identities = 19/67 (28%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Frame = -2
Query: 631 GXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPP--AXSPPXSPXPXAXXXVGX 458
G P PG PP P P GP PP PP P P G
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784
Query: 457 XXPXXAG 437
P G
Sbjct: 785 PPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.7 bits (76), Expect = 0.12
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -2
Query: 577 GGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXXXPXXAGPXPTP 422
GGP P GP PP PP + P G P GP P P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 32.7 bits (71), Expect = 0.49
Identities = 21/74 (28%), Positives = 22/74 (29%)
Frame = -2
Query: 625 PXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXXXPX 446
P GP P GGP P G P PP PP P + P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPP--PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Query: 445 XAGPXPTPXXXPXG 404
P P P P G
Sbjct: 766 GGCPPPPPPPPPGG 779
Score = 28.7 bits (61), Expect = 8.0
Identities = 19/67 (28%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Frame = -2
Query: 631 GXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPP--AXSPPXSPXPXAXXXVGX 458
G P PG PP P P GP PP PP P P G
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784
Query: 457 XXPXXAG 437
P G
Sbjct: 785 PPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.7 bits (76), Expect = 0.12
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -2
Query: 577 GGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXXXPXXAGPXPTP 422
GGP P GP PP PP + P G P GP P P
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345
Score = 32.7 bits (71), Expect = 0.49
Identities = 21/74 (28%), Positives = 22/74 (29%)
Frame = -2
Query: 625 PXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXXXPX 446
P GP P GGP P G P PP PP P + P
Sbjct: 291 PITGGPPPPPGLPPITGGPPPP--PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348
Query: 445 XAGPXPTPXXXPXG 404
P P P P G
Sbjct: 349 GGCPPPPPPPPPGG 362
Score = 28.7 bits (61), Expect = 8.0
Identities = 19/67 (28%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Frame = -2
Query: 631 GXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPP--AXSPPXSPXPXAXXXVGX 458
G P PG PP P P GP PP PP P P G
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 367
Query: 457 XXPXXAG 437
P G
Sbjct: 368 PPPPPPG 374
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 32.7 bits (71), Expect = 0.49
Identities = 20/74 (27%), Positives = 20/74 (27%)
Frame = -2
Query: 631 GXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXXX 452
G P P RG P P G G PP PP P P G
Sbjct: 94 GPPRGYPPPPPQGADTWRGAPPPAHHGHFGPPGHHFQGPPQHFPPGPPRPHFPGPPGPHR 153
Query: 451 PXXAGPXPTPXXXP 410
P P P P
Sbjct: 154 PPEHYPGPPRPQAP 167
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 31.9 bits (69), Expect = 0.86
Identities = 28/114 (24%), Positives = 31/114 (27%), Gaps = 4/114 (3%)
Frame = +1
Query: 211 PGGRGXGXGXXXPXXXGGXXXPXXPSPXRXXXSAGRXGXGGXRXXXXXXXXXEEXXXAXX 390
PG +G P GG P P P S G+ G G
Sbjct: 148 PGPQGPNGNPGAPAHGGGQGPPGPPGPAGDAGSPGQAGAPGNPGRPGQSGQRSRGLPGPS 207
Query: 391 TXXXP--PXG--XXXG*GXDPRXRGAXXPPXPQRXXXXRXEVXXPGAXXXAGRP 540
P P G G G P G PP P + PGA G P
Sbjct: 208 GRPGPQGPPGAPGQPGSGSTPGPAGPPGPPGPNGQPGHPGQDGQPGAPGNDGAP 261
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.5 bits (68), Expect = 1.1
Identities = 23/71 (32%), Positives = 24/71 (33%)
Frame = -2
Query: 634 AGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXX 455
AG P GP P GP P G AGP +P P A G
Sbjct: 161 AGPPGPPGPDGNPGSPAGPSGPGP--AGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPG 218
Query: 454 XPXXAGPXPTP 422
P AGP P P
Sbjct: 219 EPGPAGP-PGP 228
Score = 29.5 bits (63), Expect = 4.6
Identities = 36/159 (22%), Positives = 39/159 (24%), Gaps = 1/159 (0%)
Frame = +1
Query: 214 GGRGXGXGXXXPXXXGGXXXPXXPSPXRXXXSAGRXGXGGXRXXXXXXXXXEEXXXAXXT 393
GG G G G G P P P G+ G G T
Sbjct: 85 GGAGGGGGGGG-GGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVT 143
Query: 394 XXXPPXGXXXG*GXDPRXRGAXXPPXPQRXXXXRXEVXXPGAXXXAGRPXPQSXSAXXXD 573
PP G P G PP P P AG P P +
Sbjct: 144 Q--PPCQPCPG--GPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGA 199
Query: 574 PXAXGA-GEXXDXARXXXGXPRGXGRGAXXXEXXXGGGP 687
P A G GE + G P G G P
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAP 238
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.5 bits (68), Expect = 1.1
Identities = 23/71 (32%), Positives = 24/71 (33%)
Frame = -2
Query: 634 AGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXX 455
AG P GP P GP P G AGP +P P A G
Sbjct: 161 AGPPGPPGPDGNPGSPAGPSGPGP--AGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPG 218
Query: 454 XPXXAGPXPTP 422
P AGP P P
Sbjct: 219 EPGPAGP-PGP 228
Score = 29.5 bits (63), Expect = 4.6
Identities = 36/159 (22%), Positives = 39/159 (24%), Gaps = 1/159 (0%)
Frame = +1
Query: 214 GGRGXGXGXXXPXXXGGXXXPXXPSPXRXXXSAGRXGXGGXRXXXXXXXXXEEXXXAXXT 393
GG G G G G P P P G+ G G T
Sbjct: 85 GGAGGGGGGGG-GGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVT 143
Query: 394 XXXPPXGXXXG*GXDPRXRGAXXPPXPQRXXXXRXEVXXPGAXXXAGRPXPQSXSAXXXD 573
PP G P G PP P P AG P P +
Sbjct: 144 Q--PPCQPCPG--GPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGA 199
Query: 574 PXAXGA-GEXXDXARXXXGXPRGXGRGAXXXEXXXGGGP 687
P A G GE + G P G G P
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAP 238
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.5 bits (68), Expect = 1.1
Identities = 23/71 (32%), Positives = 24/71 (33%)
Frame = -2
Query: 634 AGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXX 455
AG P GP P GP P G AGP +P P A G
Sbjct: 161 AGPPGPPGPDGNPGSPAGPSGPGP--AGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPG 218
Query: 454 XPXXAGPXPTP 422
P AGP P P
Sbjct: 219 EPGPAGP-PGP 228
Score = 29.5 bits (63), Expect = 4.6
Identities = 36/159 (22%), Positives = 39/159 (24%), Gaps = 1/159 (0%)
Frame = +1
Query: 214 GGRGXGXGXXXPXXXGGXXXPXXPSPXRXXXSAGRXGXGGXRXXXXXXXXXEEXXXAXXT 393
GG G G G G P P P G+ G G T
Sbjct: 85 GGAGGGGGGGG-GGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVT 143
Query: 394 XXXPPXGXXXG*GXDPRXRGAXXPPXPQRXXXXRXEVXXPGAXXXAGRPXPQSXSAXXXD 573
PP G P G PP P P AG P P +
Sbjct: 144 Q--PPCQPCPG--GPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGA 199
Query: 574 PXAXGA-GEXXDXARXXXGXPRGXGRGAXXXEXXXGGGP 687
P A G GE + G P G G P
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAP 238
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.5 bits (68), Expect = 1.1
Identities = 23/71 (32%), Positives = 24/71 (33%)
Frame = -2
Query: 634 AGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXX 455
AG P GP P GP P G AGP +P P A G
Sbjct: 161 AGPPGPPGPDGNPGSPAGPSGPGP--AGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPG 218
Query: 454 XPXXAGPXPTP 422
P AGP P P
Sbjct: 219 EPGPAGP-PGP 228
Score = 29.5 bits (63), Expect = 4.6
Identities = 36/159 (22%), Positives = 39/159 (24%), Gaps = 1/159 (0%)
Frame = +1
Query: 214 GGRGXGXGXXXPXXXGGXXXPXXPSPXRXXXSAGRXGXGGXRXXXXXXXXXEEXXXAXXT 393
GG G G G G P P P G+ G G T
Sbjct: 85 GGAGGGGGGGG-GGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVT 143
Query: 394 XXXPPXGXXXG*GXDPRXRGAXXPPXPQRXXXXRXEVXXPGAXXXAGRPXPQSXSAXXXD 573
PP G P G PP P P AG P P +
Sbjct: 144 Q--PPCQPCPG--GPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGA 199
Query: 574 PXAXGA-GEXXDXARXXXGXPRGXGRGAXXXEXXXGGGP 687
P A G GE + G P G G P
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAP 238
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/76 (28%), Positives = 23/76 (30%)
Frame = +3
Query: 405 PXGXXXGVGXGPAXXGXXXPTXXXAXGXGEXGGEXAGGXXXRGPAXPXEXQRXGXGPPRX 584
P G GPA G G+ G AGG GPA P G P
Sbjct: 194 PSGPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGPAGPPGP--AGPAGPDG 251
Query: 585 XXXGGXXPGPXXXGXP 632
G GP G P
Sbjct: 252 QSGSGSAGGPGPKGPP 267
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 30.3 bits (65), Expect = 2.6
Identities = 28/118 (23%), Positives = 32/118 (27%), Gaps = 2/118 (1%)
Frame = +1
Query: 211 PGGRGXGXGXXXPXXXGGXXXPXXPSPXRXXXSAGRXGXGGXRXXXXXXXXXEEXXXAXX 390
PG +G P GG P P P AG+ G G +
Sbjct: 184 PGQKGPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPG 243
Query: 391 TXXXPPXGXXXG*GXDPRXRGAXXP--PXPQRXXXXRXEVXXPGAXXXAGRPXPQSXS 558
P G P G+ P P PQ PGA AG P S
Sbjct: 244 PAGPPGSPGPAGAPGQPGQAGSSQPGGPGPQ---GDAGAPGAPGAPGQAGAPGQDGES 298
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 30.3 bits (65), Expect = 2.6
Identities = 28/118 (23%), Positives = 32/118 (27%), Gaps = 2/118 (1%)
Frame = +1
Query: 211 PGGRGXGXGXXXPXXXGGXXXPXXPSPXRXXXSAGRXGXGGXRXXXXXXXXXEEXXXAXX 390
PG +G P GG P P P AG+ G G +
Sbjct: 184 PGQKGPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPG 243
Query: 391 TXXXPPXGXXXG*GXDPRXRGAXXP--PXPQRXXXXRXEVXXPGAXXXAGRPXPQSXS 558
P G P G+ P P PQ PGA AG P S
Sbjct: 244 PAGPPGSPGPAGAPGQPGQAGSSQPGGPGPQ---GDAGAPGAPGAPGQAGAPGQDGES 298
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 30.3 bits (65), Expect = 2.6
Identities = 28/118 (23%), Positives = 32/118 (27%), Gaps = 2/118 (1%)
Frame = +1
Query: 211 PGGRGXGXGXXXPXXXGGXXXPXXPSPXRXXXSAGRXGXGGXRXXXXXXXXXEEXXXAXX 390
PG +G P GG P P P AG+ G G +
Sbjct: 184 PGQKGPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPG 243
Query: 391 TXXXPPXGXXXG*GXDPRXRGAXXP--PXPQRXXXXRXEVXXPGAXXXAGRPXPQSXS 558
P G P G+ P P PQ PGA AG P S
Sbjct: 244 PAGPPGSPGPAGAPGQPGQAGSSQPGGPGPQ---GDAGAPGAPGAPGQAGAPGQDGES 298
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 30.3 bits (65), Expect = 2.6
Identities = 28/118 (23%), Positives = 32/118 (27%), Gaps = 2/118 (1%)
Frame = +1
Query: 211 PGGRGXGXGXXXPXXXGGXXXPXXPSPXRXXXSAGRXGXGGXRXXXXXXXXXEEXXXAXX 390
PG +G P GG P P P AG+ G G +
Sbjct: 184 PGQKGPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPG 243
Query: 391 TXXXPPXGXXXG*GXDPRXRGAXXP--PXPQRXXXXRXEVXXPGAXXXAGRPXPQSXS 558
P G P G+ P P PQ PGA AG P S
Sbjct: 244 PAGPPGSPGPAGAPGQPGQAGSSQPGGPGPQ---GDAGAPGAPGAPGQAGAPGQDGES 298
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 2.6
Identities = 20/77 (25%), Positives = 21/77 (27%)
Frame = -2
Query: 634 AGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGXX 455
A P G P G P P + G GP P PP P A
Sbjct: 391 APPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTG 450
Query: 454 XPXXAGPXPTPXXXPXG 404
P P P P G
Sbjct: 451 FPPVGAPPPGAAGAPGG 467
Score = 29.9 bits (64), Expect = 3.5
Identities = 26/93 (27%), Positives = 27/93 (29%), Gaps = 2/93 (2%)
Frame = +1
Query: 538 PXPQSX--SAXXXDPXAXGAGEXXDXARXXXGXPRGXGRGAXXXEXXXGGGPRXXXXXXE 711
P PQS A P A GA + G P G GA GGP
Sbjct: 380 PPPQSGPPGAFAPPPSAFGAPQGPGGP-GGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPP 438
Query: 712 XGXXRXXAPPAAXXXXGRXPPXXXXRXGXXPXA 810
G PP G PP G P A
Sbjct: 439 GGPGAYGPPPTGFPPVGAPPPGAAGAPGGNPFA 471
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 3.5
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -2
Query: 637 RAGXPXXXG-PGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSP 488
R G P G P PP GG P AGP PP S P +P
Sbjct: 324 RFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 374
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 3.5
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -2
Query: 637 RAGXPXXXG-PGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSP 488
R G P G P PP GG P AGP PP S P +P
Sbjct: 334 RFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 384
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 28.7 bits (61), Expect = 8.0
Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -2
Query: 646 AXXRAGXPXXXGPGXXPPXXXXRGGPXPXRXXSXGXAGPRXXXPPAXSPPXSPXPXA-XX 470
A R G P GP P G P + G G PA P +P P
Sbjct: 181 AAPRPGPPGPKGPRGAPGNSGRAGAPGQPGNDAHGYGGGVGAPGPA-GPRGAPGPAGHPG 239
Query: 469 XVGXXXPXXAGPXPTP 422
G P AGP P
Sbjct: 240 SSGGGRPGPAGPKGAP 255
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 28.7 bits (61), Expect = 8.0
Identities = 23/79 (29%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Frame = -2
Query: 634 AGXPXXXGPGXXPPXXXXRGGPX-PXRXXSXGXAGPRXXXPPAXSPPXSPXPXAXXXVGX 458
AG P G P G P P + S G AGPR A +P P G
Sbjct: 137 AGSPGPAGAPGAPGPQGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQAGR 196
Query: 457 XXPXXAG-PXPTPXXXPXG 404
G P P+ P G
Sbjct: 197 GGQRSHGLPGPSGAPGPQG 215
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 28.7 bits (61), Expect = 8.0
Identities = 27/118 (22%), Positives = 33/118 (27%), Gaps = 2/118 (1%)
Frame = +1
Query: 211 PGGRGXGXGXXXPXXXGGXXXPXXPSPXRXXXSAGRXGXGGXRXXXXXXXXXEEXXXAXX 390
PG +G P GG P P P +G+ G G + A
Sbjct: 219 PGQKGPSGAPGAPGQSGGSALPGPPGPAGSPGRSGQPGSNGNVGAPGAPGQVVDVPGAPG 278
Query: 391 TXXXPPXGXXXG*GXDPRXRGAXXP--PXPQRXXXXRXEVXXPGAXXXAGRPXPQSXS 558
P G P G+ P P PQ + PGA G P S
Sbjct: 279 PAGPPGPPGPSGAPGHPGQAGSSLPGAPGPQGDAGAPGQ---PGAPGQQGEPGEDGES 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.313 0.143 0.465
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,320,364
Number of Sequences: 27780
Number of extensions: 236842
Number of successful extensions: 1121
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3067730652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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