Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_G18
(918 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 3.5
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 3.5
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 3.5
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.2
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 6.2
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 6.2
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 6.2
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 29 6.2
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 6.2
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z81539-6|CAB63201.2| 236|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z68114-11|CAA92154.1| 329|Caenorhabditis elegans Hypothetical p... 28 8.1
AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen pro... 28 8.1
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 628 PWKPPRAPLPVPEPCPLTXIPVXPFXPPGNRG 723
P KPP AP P P P P PPG G
Sbjct: 133 PGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPG 164
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +1
Query: 625 PPWKPPRAPLPVPEPCPLTXIPVXP--FXPP 711
PP PP P+ P P P P+ P F PP
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPPQFCPP 58
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 625 PPWKPPRAPLPVPEPCPLTXIPVXPFXPP 711
P PP P P P CP P P PP
Sbjct: 36 PMCAPPPLPCPPPPICPPQFCPPPPMCPP 64
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 628 PWKPPRAPLPVPEPCPLTXIPVXPFXPPGNRG 723
P KPP AP P P P P PPG G
Sbjct: 133 PGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPG 164
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 628 PWKPPRAPLPVPEPCPLTXIPVXPFXPPGNRG 723
P KPP AP P P P P PPG G
Sbjct: 131 PGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPG 162
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 628 PWKPPRAPLPVPEPCPLTXIPVXPFXPPGNRG 723
P KPP AP P P P P PPG G
Sbjct: 126 PGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPG 157
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Frame = +1
Query: 625 PPWKPPRA-PLP------VPEPCPLTXIPVXPFXPPGN 717
PP PP A PLP +P P PL IP P PPGN
Sbjct: 771 PPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPP--PPGN 806
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 628 PWKPPRAPLPVPEPCPLTXIPVXPFXPPGNRG 723
P KPP AP P P P P PPG G
Sbjct: 126 PGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPG 157
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 628 PWKPPRAPLPVPEPCPLTXIPVXPFXPPGNRG 723
P KPP+ P + P P + P P PG +G
Sbjct: 120 PGKPPQQPCELVTPPPCSPCPAGPPGKPGPQG 151
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Frame = +1
Query: 625 PPWKPPRA-PLP------VPEPCPLTXIPVXPFXPPGN 717
PP PP A PLP +P P PL IP P PPGN
Sbjct: 771 PPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPP--PPGN 806
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 628 PWKPPRAPLPVPEPCPLTXIPVXPFXPPGNRGRLSXNLTP 747
P +PP+ P P P P P PPG G N P
Sbjct: 119 PGRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGIPGDNGPP 158
>Z81539-6|CAB63201.2| 236|Caenorhabditis elegans Hypothetical
protein F46A8.8 protein.
Length = 236
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 628 PWKPPRAPLPVPEPCPLTXIPV--XPFXP 708
P +PPR P PVP P P+ + PF P
Sbjct: 78 PPRPPRPPRPVPTPKPVENMETLNGPFGP 106
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 628 PWKPPRAPL-PV-PEPC-PLTXIPVXPFXPPGNRGRLSXNLTP 747
P +PP+ P P+ P PC P P P PPG G N P
Sbjct: 129 PGRPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGSNGNP 171
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 628 PWKPPRAPL-PV-PEPC-PLTXIPVXPFXPPGNRGRLSXNLTP 747
P +PP+ P P+ P PC P P P PPG G N P
Sbjct: 129 PGRPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGGNGNP 171
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 628 PWKPPRAPL-PV-PEPC-PLTXIPVXPFXPPGNRG 723
P +PP+ P P+ P PC P P P PPG +G
Sbjct: 119 PGRPPKEPCEPITPPPCKPCPEGPPGPAGPPGPQG 153
>Z68114-11|CAA92154.1| 329|Caenorhabditis elegans Hypothetical
protein F17A2.5 protein.
Length = 329
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 590 ETRQDYKDTXRFPPGNPLVPLSLFPN 667
E R++ K R PPG P P SL PN
Sbjct: 255 ERRENRKPEDRPPPGAPGAPYSLVPN 280
>AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen
protein 71 protein.
Length = 371
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 628 PWKPPRAPL-PV-PEPCPLTXIPVXPFXPPGNRG 723
P +PP AP PV P PCP P P PG G
Sbjct: 201 PGRPPEAPCEPVTPPPCP--PCPAGPKGAPGQAG 232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,692,825
Number of Sequences: 27780
Number of extensions: 334931
Number of successful extensions: 1352
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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