Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G17
         (1281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.79 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.6  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 359 PGGXXGGGGXQGGXXXRXXXXXAXGXGQXXAXXXGXGGAR 478
           PG   G GG +GG           G G+  A   G GGAR
Sbjct: 5   PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGAR 44


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 396 PPWXPPPPXXPPG 358
           PP  PPPP  PPG
Sbjct: 5   PPGNPPPPPPPPG 17


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = -1

Query: 498 PXXAXLXLAPPXPXXXAXXWPXPXAXLXXXLXXXPPWXPPPPXXPPGXXXGGXR 337
           P  A + + PP P       P P   +           PPPP  PP    GG R
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGA------GPPPPPPPPPAVSAGGSR 791



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
 Frame = -1

Query: 483 LXLAPPXPXXXAXXWPXPXAXLXXXLXXXPPWX-PPPPXXPPGXXXGGXRP 334
           L L  P P   A   P P           P    PPPP  PPG    G  P
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.139    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,939
Number of Sequences: 5004
Number of extensions: 15143
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)