Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G16
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   1.5  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   2.7  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   4.7  

>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 653 PLTPSXTXWLP*TPPCSXXXRSXFFRSTTEXFNSVXDP*IKNFXRPPKTGK 805
           PL+P+   WLP T P      +  ++  +   N V  P   +  RPPK  K
Sbjct: 265 PLSPTLAVWLPMTQPTFQPPSANVYQPASNA-NQVITPVSISDYRPPKKRK 314


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = -1

Query: 324 MVFFFPFSIRRFTASLITSPFFSFRYSEHLPIAVSYSPMTTLIYSCSASTSSVLGASVAL 145
           M FF   ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 144 EASAHTARTKA 112
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 188 QLYMSVVIGEY-ETAIGKCSEYLKEKKGEVIKEAVKRLIE 304
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,020
Number of Sequences: 5004
Number of extensions: 56886
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)