Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G14
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.22 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.90 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 791 PPXPXXXXXPXPXXXPPPGXPP 856
           P  P     P P   PPPG PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPP 52



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
 Frame = +1

Query: 736 PXXXPXPXXXPXXXXPPXPPXPXXXXPP-XPXXXPPA 843
           P   P P   P       PP P    PP  P   PP+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 550  LERAGD**ETGAQDQGRLRRL---REEHPGGDQED 645
            + RAG   E   +D  +L R    RE H GG QED
Sbjct: 1403 ISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQED 1437


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 51  TPLCCSPVRISSALSLSTVHHGRQVRSSLRLH 146
           T L CS  R    LS+S +  GR +  S R+H
Sbjct: 628 TTLTCSVTRGDLPLSISWLKDGRAMGPSERVH 659


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 171 HHRSLGQSDAGEENYELGGHDVL 103
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,885
Number of Sequences: 438
Number of extensions: 4968
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)