Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G13
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 724 PXPXPPPXPPPAXXP 768
           P P PPP PP +  P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 832 PXPPPPXPPP 861
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 838 PPPPXPPPXXP 870
           PP P PPP  P
Sbjct: 338 PPKPAPPPPPP 348


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 345 LTFRFRYTFASFRVPDIRPVAEALWYVAWAHVVNEIVDFGILTV-RLGHLRAIQ 187
           L F   Y    F  PD  P    ++++ W   VN  ++  I T+  L + RA +
Sbjct: 341 LPFFLMYVIVPF-CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFR 393


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 345 LTFRFRYTFASFRVPDIRPVAEALWYVAWAHVVNEIVDFGILTV-RLGHLRAIQ 187
           L F   Y    F  PD  P    ++++ W   VN  ++  I T+  L + RA +
Sbjct: 341 LPFFLMYVIVPF-CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFR 393


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 838  PPPPXPPP 861
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 345 LTFRFRYTFASFRVPDIRPVAEALWYVAWAHVVNEIVDFGILTV-RLGHLRAIQ 187
           L F   Y    F  PD  P    ++++ W   VN  ++  I T+  L + RA +
Sbjct: 341 LPFFLMYVIVPF-CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFR 393


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 718 PXPXPXPPPXPPPAXXP 768
           P P   PPP  PP   P
Sbjct: 40  PNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,252
Number of Sequences: 438
Number of extensions: 6095
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)