Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G12
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...   182   4e-46
AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...   181   7e-46
AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical ...    81   1e-15
AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical ...    58   7e-09
U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical pr...    33   0.37 
Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z29561-2|CAD54152.1|  882|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z29561-1|CAA82667.2|  861|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U73679-1|AAC67305.1|  861|Caenorhabditis elegans YNK1-a protein.       31   1.1  
U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    30   2.0  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    29   4.6  
U41030-1|AAA82362.2|  371|Caenorhabditis elegans Hypothetical pr...    29   6.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.0  

>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score =  182 bits (442), Expect = 4e-46
 Identities = 85/166 (51%), Positives = 113/166 (68%), Gaps = 2/166 (1%)
 Frame = +1

Query: 79  IMSLVAQAFEASKIVPDVIPV-APTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAE 255
           + ++ A+AF   +++PDV+    P+K + +K+ SG  A+ GN LTPTQVKD P V ++AE
Sbjct: 34  LATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAE 93

Query: 256 ADAFYTLVFTDPDNYDGPELVYREWHHWLVGNIPGGDVSAGETLSGYIGSGPPQGTGIHR 435
             A YTL+ TDPD     E  YREWHHWLV NIPG D++ G+TLS YIG+GPP  TG+HR
Sbjct: 94  PGALYTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHR 153

Query: 436 YVYILYKQPGKL-DFDEKRLTNTSIDGRASFSTKKFAEKYNLXAPV 570
           YVY++YKQ G++ D +  RLTNTS D R  +    F  K+ L APV
Sbjct: 154 YVYLIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPV 199


>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score =  181 bits (440), Expect = 7e-46
 Identities = 85/163 (52%), Positives = 111/163 (68%), Gaps = 2/163 (1%)
 Frame = +1

Query: 88  LVAQAFEASKIVPDVIPV-APTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADA 264
           + A+AF   +++PDV+    P+K + +K+ SG  A+ GN LTPTQVKD P V ++AE  A
Sbjct: 1   MAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAEPGA 60

Query: 265 FYTLVFTDPDNYDGPELVYREWHHWLVGNIPGGDVSAGETLSGYIGSGPPQGTGIHRYVY 444
            YTL+ TDPD     E  YREWHHWLV NIPG D++ G+TLS YIG+GPP  TG+HRYVY
Sbjct: 61  LYTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVY 120

Query: 445 ILYKQPGKL-DFDEKRLTNTSIDGRASFSTKKFAEKYNLXAPV 570
           ++YKQ G++ D +  RLTNTS D R  +    F  K+ L APV
Sbjct: 121 LIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPV 163


>AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical
           protein Y69E1A.5 protein.
          Length = 172

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 5/169 (2%)
 Frame = +1

Query: 82  MSLVAQAFEASKIVPDVIPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFE-AEA 258
           MS ++ AF   +I P +I  AP + + L +  G     G  +    +K+ P      A+ 
Sbjct: 1   MSDISAAFAQHEITPKIIENAPKQKLHLCW-DGIQVEPGMTMQVRNLKNAPRWALPGADP 59

Query: 259 DAFYTLVFTDPDNYDGPELVYREWHHWLVGNIPGGD----VSAGETLSGYIGSGPPQGTG 426
           ++ YT++  DPDN         EW HWLV NIP  +    ++ G+    Y    P   T 
Sbjct: 60  ESIYTVLMIDPDNLSRKNPSVAEWLHWLVCNIPASNIIDGINGGQHQMAYGSPAPGPRTD 119

Query: 427 IHRYVYILYKQPGKLDFDEKRLTNTSIDGRASFSTKKFAEKYNLXAPVA 573
           +HRYV ++++  G      +R++      RA F+ K+F EK  L  P+A
Sbjct: 120 LHRYVILMWEHAG------RRISVPKPSSRAKFNVKQFIEKNKLGDPIA 162


>AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical
           protein Y34D9A.1 protein.
          Length = 413

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
 Frame = +1

Query: 151 KNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADA--FYTLVFTDPDNYDGPELVYR 324
           +N+++ + +  +   GN +T      +P +T E+  +   F TL+  + D          
Sbjct: 155 QNLQVNFENDIVVHSGNVITANSTLKRPEITIESVGNGGGFNTLLMINLDGNALDLGKNG 214

Query: 325 EWHHWLVGNIPGGD-VSAGETLSGYIGSGPPQGTGIHRYVYILYKQPGKLDFDEKRLTNT 501
           E   W++ NIP G+ +SAG  +  Y+   P  GTG HR  ++L++    +DF   ++   
Sbjct: 215 EIVQWMISNIPDGEAISAGSEIIDYLQPLPFYGTGYHRVAFVLFRHEKPVDF---QIQGN 271

Query: 502 SIDGRASFSTKKFAEKY 552
           S+D R      KF +K+
Sbjct: 272 SLDTRI-HEISKFYKKH 287


>U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical
           protein C56G2.4 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +1

Query: 334 HWLVGNIPGGDVSA----GETLSGYIGSGPPQGTGIHRYVYILYKQPGKLDFDEKRLTNT 501
           HWL  +IP  +++A    G T + Y+   P + +  H Y+++L  QP  +   E      
Sbjct: 375 HWLEVDIPAANLNAANGNGLTKADYVPLIPKKPSTCHSYLFVLLAQPASMQTLES-YCEG 433

Query: 502 SIDGRASFSTKKFAEKYNL 558
             + R  F  + F +++ L
Sbjct: 434 MCETRKKFRLELFKQQHGL 452


>Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical
           protein R10E12.1d protein.
          Length = 498

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 425 PVPWGGPEPMYPDRVSPAETSP----PGMFPTSQ 336
           P+P+G P+PM+  +  P   +P    PG FP+ Q
Sbjct: 430 PMPYGQPQPMFQPQYQPTFAAPYPTFPGAFPSYQ 463


>Z29561-2|CAD54152.1|  882|Caenorhabditis elegans Hypothetical
           protein R10E12.1b protein.
          Length = 882

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 425 PVPWGGPEPMYPDRVSPAETSP----PGMFPTSQ 336
           P+P+G P+PM+  +  P   +P    PG FP+ Q
Sbjct: 814 PMPYGQPQPMFQPQYQPTFAAPYPTFPGAFPSYQ 847


>Z29561-1|CAA82667.2|  861|Caenorhabditis elegans Hypothetical
           protein R10E12.1a protein.
          Length = 861

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 425 PVPWGGPEPMYPDRVSPAETSP----PGMFPTSQ 336
           P+P+G P+PM+  +  P   +P    PG FP+ Q
Sbjct: 793 PMPYGQPQPMFQPQYQPTFAAPYPTFPGAFPSYQ 826


>U73679-1|AAC67305.1|  861|Caenorhabditis elegans YNK1-a protein.
          Length = 861

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 425 PVPWGGPEPMYPDRVSPAETSP----PGMFPTSQ 336
           P+P+G P+PM+  +  P   +P    PG FP+ Q
Sbjct: 793 PMPYGQPQPMFQPQYQPTFAAPYPTFPGAFPSYQ 826


>U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical
           protein C26B2.8 protein.
          Length = 373

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
 Frame = +1

Query: 103 FEASKIVPDVIPVAPTKNIELKYPSGAIASQGNELTP---TQVKDQP--SVTFEAEADAF 267
           F  ++IVP ++PVAP   +   +    I S G         ++ D P  S   E + +  
Sbjct: 202 FRENRIVPRLLPVAPAYELIATFSDEQI-SMGQLFDADILDKLADPPVMSAGVELQDEKL 260

Query: 268 YTLVFTDPDNYDGPELVYREWHHWLVGNIPG--GDVSAGETLSGYIGSGPPQGT----GI 429
           YT++  D  +         +   WLV NI    G +         +   PP  T    G+
Sbjct: 261 YTIILADATS---------KAVTWLVANIAAFDGQLEIHRRTKSAVSYQPPDSTDRPVGM 311

Query: 430 HRYVYILYKQPGKLDFDEKRLTNTSIDGRASFSTKKFAEKY 552
           H  +  LY+Q     + +K L   ++D    F+  ++ E+Y
Sbjct: 312 HTMILALYEQND--TWTQKDLARIAMD---DFNFTEWLEEY 347


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 24/83 (28%), Positives = 24/83 (28%)
 Frame = -1

Query: 909 GGGGXXXXXRXXGGXXXKXRXXXXXFXGXKGXXWGXXXRXGGVXNXXGRXXXEGGAGEXP 730
           GGGG     R   G             G     WG     GG     G     GG G  P
Sbjct: 92  GGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGG---GRGGDGRGP 148

Query: 729 PR*KGXXXXAGTXXGGGXGXXXG 661
           P   G     G   GGG G   G
Sbjct: 149 PGSNGGGDWGGN-GGGGRGGGGG 170


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 127 DVIPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAE--ADAFYTLVFTDPDNY 300
           DV P  PT N+    P   ++ Q +E +P       SV  E E  A +  TLVFT+    
Sbjct: 433 DVSP--PTSNVTQDSPK-EMSYQHSEPSPALPSPDASVPSEHERFARSPPTLVFTEQSTE 489

Query: 301 DGPELVYREWHH 336
           D PE      HH
Sbjct: 490 DAPESPNEVVHH 501


>U41030-1|AAA82362.2|  371|Caenorhabditis elegans Hypothetical
           protein C44C1.2 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 325 EWHHWLVGNIPGGDVS-AGETLSGY-IGSGPPQGTGIHRYVYILYKQPGKLDFDEKRL 492
           +W    +  + GG  + AG    GY    G  +     RY+ +L  +  KL+FDEK +
Sbjct: 264 DWFESCIFYLGGGHKTLAGLNFYGYEFSKGNVEAITADRYLTLLKSEKSKLEFDEKSM 321


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +1

Query: 784 TPPPXXXPPXTXLXPXKXXXXXSXFXPAPPXXPXXXXXTPP 906
           TP P   PP   + P       S   P PP  P      PP
Sbjct: 271 TPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 311


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +1

Query: 784 TPPPXXXPPXTXLXPXKXXXXXSXFXPAPPXXPXXXXXTPP 906
           TP P   PP   + P       S   P PP  P      PP
Sbjct: 281 TPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,364,118
Number of Sequences: 27780
Number of extensions: 361453
Number of successful extensions: 1094
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)