Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G11
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   2.8  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   6.5  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 26/79 (32%), Positives = 30/79 (37%)
 Frame = -1

Query: 771 LXYLTGGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGGKXLYL**SCRGSP 592
           + Y  G      G    R G  GG   FG  G+G  + G RG   GG+        RG  
Sbjct: 1   MAYTPGSRGGRGGSRGGRGGFNGGRGGFG-GGRGGARGGGRGGARGGR------GGRGGA 53

Query: 591 LXTXGGIL*CSSGGRSXWK 535
               GG    SSGGR   K
Sbjct: 54  RGGRGG----SSGGRGGAK 68


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/69 (30%), Positives = 24/69 (34%)
 Frame = +1

Query: 544 APPP*RASQNPTXSXKWRTPTGLLKIQXFPPWKAPSCXXLFRTLPPLPEYLVPXFXPXPG 723
           A PP  A   PT   + R PT        PP    S   +    PP+P  L P   P   
Sbjct: 122 AAPP-SAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180

Query: 724 XXXPFPHXP 750
              P P  P
Sbjct: 181 VKSP-PSAP 188


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 741 GKGXXXSRXGXKGGNKV-FG*RGQGSEQXGARGSFPGG 631
           G+G      G +GG++  FG   +G    G+RG F GG
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 610 LLKIQXFPPWKAPSC 654
           LLK+Q FPPW+   C
Sbjct: 212 LLKLQGFPPWQLRLC 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,098
Number of Sequences: 5004
Number of extensions: 45910
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)