Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_G11
(921 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60858-1|AAA59954.1| 707|Homo sapiens nucleolin protein. 38 0.068
BC006516-1|AAH06516.3| 482|Homo sapiens NCL protein protein. 38 0.068
BC006494-1|AAH06494.3| 482|Homo sapiens NCL protein protein. 38 0.068
BC002343-1|AAH02343.3| 482|Homo sapiens NCL protein protein. 38 0.068
AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens ... 38 0.068
AK091742-1|BAC03738.1| 687|Homo sapiens protein ( Homo sapiens ... 38 0.068
AC017104-2|AAY24247.1| 710|Homo sapiens unknown protein. 38 0.068
X71428-1|CAA50559.1| 525|Homo sapiens FUS gycline rich protein ... 34 0.83
U36561-1|AAA79948.1| 528|Homo sapiens fus-like protein protein. 34 0.83
S62140-1|AAB27102.1| 526|Homo sapiens TLS protein. 34 0.83
CR456747-1|CAG33028.1| 526|Homo sapiens FUS protein. 34 0.83
BT007131-1|AAP35795.1| 526|Homo sapiens fusion, derived from t(... 34 0.83
BC026062-1|AAH26062.1| 526|Homo sapiens fusion (involved in t(1... 34 0.83
BC002459-1|AAH02459.1| 526|Homo sapiens fusion (involved in t(1... 34 0.83
BC000402-1|AAH00402.1| 526|Homo sapiens fusion (involved in t(1... 34 0.83
AF071213-2|AAC35284.1| 525|Homo sapiens FUS/TLS protein protein. 34 0.83
AF071213-1|AAC35285.1| 526|Homo sapiens FUS/TLS protein protein. 34 0.83
AB208902-1|BAD92139.1| 300|Homo sapiens fusion (involved in t(1... 34 0.83
AB051514-1|BAB21818.1| 1130|Homo sapiens KIAA1727 protein protein. 31 5.9
>M60858-1|AAA59954.1| 707|Homo sapiens nucleolin protein.
Length = 707
Score = 37.5 bits (83), Expect = 0.068
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGGK 628
GG G+G R G +GG FG RG+G G RG F GG+
Sbjct: 651 GGRGGGRGGFGGRGGGRGGRGGFGGRGRGG--FGGRGGFRGGR 691
>BC006516-1|AAH06516.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 37.5 bits (83), Expect = 0.068
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGGK 628
GG G+G R G +GG FG RG+G G RG F GG+
Sbjct: 426 GGRGGGRGGFGGRGGGRGGRGGFGGRGRGG--FGGRGGFRGGR 466
>BC006494-1|AAH06494.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 37.5 bits (83), Expect = 0.068
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGGK 628
GG G+G R G +GG FG RG+G G RG F GG+
Sbjct: 426 GGRGGGRGGFGGRGGGRGGRGGFGGRGRGG--FGGRGGFRGGR 466
>BC002343-1|AAH02343.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 37.5 bits (83), Expect = 0.068
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGGK 628
GG G+G R G +GG FG RG+G G RG F GG+
Sbjct: 426 GGRGGGRGGFGGRGGGRGGRGGFGGRGRGG--FGGRGGFRGGR 466
>AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar
to Nucleolin. ).
Length = 603
Score = 37.5 bits (83), Expect = 0.068
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGGK 628
GG G+G R G +GG FG RG+G G RG F GG+
Sbjct: 547 GGRGGGRGGFGGRGGGRGGRGGFGGRGRGG--FGGRGGFRGGR 587
>AK091742-1|BAC03738.1| 687|Homo sapiens protein ( Homo sapiens
cDNA FLJ34423 fis, clone HHDPC2008123, highly similar to
NUCLEOLIN. ).
Length = 687
Score = 37.5 bits (83), Expect = 0.068
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGGK 628
GG G+G R G +GG FG RG+G G RG F GG+
Sbjct: 631 GGRGGGRGGFGGRGGGRGGRGGFGGRGRGG--FGGRGGFRGGR 671
>AC017104-2|AAY24247.1| 710|Homo sapiens unknown protein.
Length = 710
Score = 37.5 bits (83), Expect = 0.068
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGGK 628
GG G+G R G +GG FG RG+G G RG F GG+
Sbjct: 654 GGRGGGRGGFGGRGGGRGGRGGFGGRGRGG--FGGRGGFRGGR 694
>X71428-1|CAA50559.1| 525|Homo sapiens FUS gycline rich protein
protein.
Length = 525
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 459 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 500
>U36561-1|AAA79948.1| 528|Homo sapiens fus-like protein protein.
Length = 528
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 463 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 504
>S62140-1|AAB27102.1| 526|Homo sapiens TLS protein.
Length = 526
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 460 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 501
>CR456747-1|CAG33028.1| 526|Homo sapiens FUS protein.
Length = 526
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 460 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 501
>BT007131-1|AAP35795.1| 526|Homo sapiens fusion, derived from
t(12;16) malignant liposarcoma protein.
Length = 526
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 460 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 501
>BC026062-1|AAH26062.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 460 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 501
>BC002459-1|AAH02459.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 460 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 501
>BC000402-1|AAH00402.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 460 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 501
>AF071213-2|AAC35284.1| 525|Homo sapiens FUS/TLS protein protein.
Length = 525
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 459 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 500
>AF071213-1|AAC35285.1| 526|Homo sapiens FUS/TLS protein protein.
Length = 526
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 460 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 501
>AB208902-1|BAD92139.1| 300|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) isoform a variant
protein.
Length = 300
Score = 33.9 bits (74), Expect = 0.83
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 756 GGXXMGKGXXXSRXGXKGGNKVFG*RGQGSEQXGARGSFPGG 631
GG MG R G +GG G RG+G ++ G RG GG
Sbjct: 234 GGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 275
>AB051514-1|BAB21818.1| 1130|Homo sapiens KIAA1727 protein protein.
Length = 1130
Score = 31.1 bits (67), Expect = 5.9
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +2
Query: 632 PPGKLPRAPXCS---EPCPLYPNTLFPPFXPXREXXXPFPIXXPPVRYXN 772
PP P +P CS E CP P PP P P P PP + N
Sbjct: 24 PPPPPPPSPPCSCSREECPSSPPPPPPPPLPGEPPIPPPPPGLPPTTHMN 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,634,052
Number of Sequences: 237096
Number of extensions: 2253184
Number of successful extensions: 10124
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9952
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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