Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G09
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    33   0.36 
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      30   2.5  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    30   2.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.3  

>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 195 HSSCCRSNQVLCCGYR 148
           +SSCC SN   CCGYR
Sbjct: 88  YSSCCNSNNFSCCGYR 103


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 728 KKXPPLXXPPPKKXPPXGXFFXPPPXXSLFFPXXXXP 838
           K+ PP    PP +  P   FF PPP  + F P    P
Sbjct: 44  KQAPPSGILPPGQSIPKPSFFIPPPVPNGFIPPPPGP 80


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 728  KKXPPLXXPPPKKX--PPXGXFFXPPPXXSL 814
            KK PPL  PPP +   PP G +  PP   +L
Sbjct: 1277 KKKPPLQPPPPPQMTGPPIGIYPGPPAPGNL 1307


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 728  KKXPPLXXPPPKKX--PPXGXFFXPPPXXSL 814
            KK PPL  PPP +   PP G +  PP   +L
Sbjct: 1277 KKKPPLQPPPPPQMTGPPIGIYPGPPAPGNL 1307


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +2

Query: 737 PPLXXPPPKKXPPXGXFF---XPPPXXSLFFP 823
           PP   PPP   PP G F     PPP   +F P
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +2

Query: 737 PPLXXPPPKKXPPXGXFF---XPPPXXSLFFP 823
           PP   PPP   PP G F     PPP   +F P
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +2

Query: 737 PPLXXPPPKKXPPXGXFF---XPPPXXSLFFP 823
           PP   PPP   PP G F     PPP   +F P
Sbjct: 347 PPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,705
Number of Sequences: 27780
Number of extensions: 226581
Number of successful extensions: 824
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)