Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G03
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.067
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.27 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.47 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.067
 Identities = 18/52 (34%), Positives = 19/52 (36%)
 Frame = +1

Query: 685 PPPXXXXXXXKPPXFXXXAPPSXXSGXXGXXXKNPXPXPAXXXPLPPPXPPP 840
           PPP         P      PP+   G  G     P P  A   P PPP PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMG--GPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
 Frame = +1

Query: 646 GGGPLXXSFXPKKPPPXXXXXXXKP-PXFXXXAPPSXXSGXXGXXXKNPXPXPAXXXPLP 822
           G G    S  P  PPP        P P     APP           + P P  +      
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387

Query: 823 PPXPPP 840
           PP PPP
Sbjct: 388 PPAPPP 393



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 787 PXPXPAXXXPLPPPXPPP 840
           P   P+   P PPP PPP
Sbjct: 242 PERVPSLSAPAPPPIPPP 259


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -3

Query: 746 GGAXXXXXGGXFXFXXXXGGGFLGXKEXXRGPPPXPPXF 630
           GG      G  F      GGGF G      GPPP P  F
Sbjct: 169 GGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGF 207


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/62 (25%), Positives = 20/62 (32%)
 Frame = +1

Query: 655 PLXXSFXPKKPPPXXXXXXXKPPXFXXXAPPSXXSGXXGXXXKNPXPXPAXXXPLPPPXP 834
           P   S  P  P          PP      PP+  +         P   P+   P+PP  P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS-LPSAVPPMPPKVP 202

Query: 835 PP 840
           PP
Sbjct: 203 PP 204


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +1

Query: 688  PPXXXXXXXKPPXFXXXAPPSXXSGXXGXXXKNPXPXPAXXXPLPP 825
            PP        PP      PPS      G     P P PA   P  P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 787 PXPXPAXXXPLPPPXPPP 840
           P P P    P  PP PPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,454
Number of Sequences: 5004
Number of extensions: 30502
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)