Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G02
         (993 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       38   0.016
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           33   0.27 
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    31   1.4  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   5.8  
09_03_0145 - 12749288-12751510                                         29   7.6  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 243 GPPPXXXXQXPXEKXPPXG-GXXPPPPXGGXRGXXP 347
           GPPP    + P    PP G    PPPP GG +G  P
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378



 Score = 31.9 bits (69), Expect = 0.82
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
 Frame = +3

Query: 243 GPPPXXXXQXPXEKXPPX-----GGXXPPPPXGG 329
           GPPP    + P    PP      GG  PPPP GG
Sbjct: 352 GPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385



 Score = 29.1 bits (62), Expect = 5.8
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 246 PPPXXXXQXPXEKXPPXGGXXPPPPXG 326
           PPP      P    PP     PPPP G
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKG 343



 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
 Frame = +3

Query: 246 PPPXXXXQXPXEKXPPXG--GXXPPPPXGGXRGXXP 347
           PPP      P    PP G  G  PPPP  G     P
Sbjct: 355 PPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +3

Query: 243 GPPPXXXXQXPXEKXPPXGGXXPPPPXG--GXRGXXP 347
           GPPP      P    PP  G  PPPP G  G  G  P
Sbjct: 348 GPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGP 384


>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
            257038-257169,257297-258589,259133-259837,260465-260549,
            260604-260650,260810-260900,261838-262101,262195-262309,
            262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
 Frame = +3

Query: 204  PXXXKTQKTXGKXGPPPXXXXQXPXEKXPPX--GGXXPPPPXGG 329
            P    T  T     PPP      P    PP   GG  PPPP  G
Sbjct: 906  PAPSATANTASALSPPPPRPPGAPPPPPPPGKPGGPPPPPPPPG 949


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
 Frame = +3

Query: 204  PXXXKTQKTXGKXGPPPXXXXQXPXEKXPPXGGX--XPPPPXGGXRG 338
            P    T    G   PPP      P    PP G     PPPP GG  G
Sbjct: 1086 PPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGG 1132


>09_03_0145 - 12749288-12751510
          Length = 740

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 246 PPPXXXXQXPXEKXPPXGGXXPPPPXGGXRGXXP 347
           PPP    Q P    P      PPPP  G R   P
Sbjct: 33  PPPPPGIQPPPPALPGMPHGRPPPPFPGGRDAFP 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,966,350
Number of Sequences: 37544
Number of extensions: 108655
Number of successful extensions: 790
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2905255520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)