Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_G02
(993 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.55
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.8
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 26 7.2
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 32.3 bits (70), Expect = 0.55
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Frame = +3
Query: 234 GKXGPPPXXXXQXPXEKXPP---XGGXXPPPPXG-GXRGXXP 347
G GPPP P PP GG PPPP G G G P
Sbjct: 407 GGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPP 448
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Frame = +3
Query: 228 TXGKXGPPPXXXXQX----PXEKXPPXGGX---XPPPPXGGXRGXXP 347
T G PPP P PP GG PPPP GG +G P
Sbjct: 739 TGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +3
Query: 234 GKXGPPPXXXXQXPXEKXPPX-GGXXPPPPXGG 329
G PP P PP GG PPPP GG
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGG 734
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 243 GPPPXXXXQXPXEKXPPXGGXXPPPPXGG 329
GPPP P P GG PPPP GG
Sbjct: 725 GPPPPPP---PGGLPPITGGPPPPPPPGG 750
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Frame = +3
Query: 228 TXGKXGPPPXXXXQX----PXEKXPPXGGX---XPPPPXGGXRGXXP 347
T G PPP P PP GG PPPP GG +G P
Sbjct: 739 TGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +3
Query: 234 GKXGPPPXXXXQXPXEKXPPX-GGXXPPPPXGG 329
G PP P PP GG PPPP GG
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGG 734
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 243 GPPPXXXXQXPXEKXPPXGGXXPPPPXGG 329
GPPP P P GG PPPP GG
Sbjct: 725 GPPPPPP---PGGLPPITGGPPPPPPPGG 750
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Frame = +3
Query: 228 TXGKXGPPPXXXXQX----PXEKXPPXGGX---XPPPPXGGXRGXXP 347
T G PPP P PP GG PPPP GG +G P
Sbjct: 322 TGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +3
Query: 234 GKXGPPPXXXXQXPXEKXPPX-GGXXPPPPXGG 329
G PP P PP GG PPPP GG
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGG 317
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 243 GPPPXXXXQXPXEKXPPXGGXXPPPPXGG 329
GPPP P P GG PPPP GG
Sbjct: 308 GPPPPPP---PGGLPPITGGPPPPPPPGG 333
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 225 KTXGKXGPPPXXXXQXPXEKXPPXGGXXPPPPXGGXR 335
+T G G P P PP G PPPP G R
Sbjct: 306 RTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMR 342
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 225 KTXGKXGPPPXXXXQXPXEKXPPXGGXXPPPPXGGXR 335
+T G G P P PP G PPPP G R
Sbjct: 316 RTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMR 352
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 243 GPPPXXXXQXPXEKXPPXGGXXPPPPXGG 329
GPPP P PP G PPPP GG
Sbjct: 1584 GPPPLMGGPPPRLGMPPPG---PPPPNGG 1609
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +3
Query: 234 GKXGPPPXXXXQXPXEKXPPXGGXXPPPPXGG--XRGXXPXXXXG 362
G+ GPPP P PP PP GG RG P G
Sbjct: 1464 GRGGPPPPRGMNSPMRGMPPPMRGGGPPMRGGPPMRGGPPMFRGG 1508
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Frame = +3
Query: 234 GKXGPPPXXXXQXPXEKX---PPXGGXXPPPPXGG 329
G PPP P PP G PPPP GG
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Frame = +3
Query: 234 GKXGPPPXXXXQXPXEKX---PPXGGXXPPPPXGG 329
G PPP P PP G PPPP GG
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Frame = +3
Query: 234 GKXGPPPXXXXQXPXEKX---PPXGGXXPPPPXGG 329
G PPP P PP G PPPP GG
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 26.2 bits (55), Expect(2) = 7.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 246 PPPXXXXQXPXEKXPPXGGXXPPPPXG 326
PPP P PP G PPPP G
Sbjct: 707 PPPPGIPGYPPAPPPP--GVGPPPPQG 731
Score = 20.6 bits (41), Expect(2) = 7.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +3
Query: 309 PPPPXGGXRGXXP 347
PPPP GG P
Sbjct: 771 PPPPRGGMHHMPP 783
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,706,465
Number of Sequences: 27780
Number of extensions: 74920
Number of successful extensions: 594
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2594635024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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