Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_G01
         (1147 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.52 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   9.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 440 PPPPPXXXGGXPPPP 396
           PPPPP   G  PPPP
Sbjct: 764 PPPPPGVAGAGPPPP 778



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/53 (26%), Positives = 17/53 (32%)
 Frame = +3

Query: 237 PPPXLLXXXAXXXRGPXXXXXXAPPPXPPPPXAXQXPNKQLXXXFXXXXPXPR 395
           PPP  +         P       PPP PPPP A      +         P P+
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 437 PPPPXXXGGXPPPP 396
           PPP    GG PPPP
Sbjct: 752 PPPAPIMGGPPPPP 765



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 440 PPPPPXXXGGXPPPP 396
           PPPPP    G  PPP
Sbjct: 763 PPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 440 PPPPPXXXGGXPPPP 396
           PPPP     G PPPP
Sbjct: 765 PPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 440 PPPPPXXXGGXPPPP 396
           PPP P   G  PPPP
Sbjct: 752 PPPAPIMGGPPPPPP 766


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect(2) = 3.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 303 APPPXPPPP 329
           +PPP PPPP
Sbjct: 369 SPPPPPPPP 377



 Score = 21.8 bits (44), Expect(2) = 3.7
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +3

Query: 306 PPPXPPPPXAXQXPNKQ 356
           PPP PPP      P  +
Sbjct: 371 PPPPPPPELLNHSPKSR 387


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 9.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 306 PPPXPPPPXAXQXPNK 353
           PPP PPP    +  NK
Sbjct: 24  PPPPPPPGYVKKRKNK 39



 Score = 21.0 bits (42), Expect(2) = 9.1
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +3

Query: 183 PSGXPPPHXLKXGGQXXAPPP 245
           P   PPP   +   Q   PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.142    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,897
Number of Sequences: 5004
Number of extensions: 21446
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 611599874
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)