Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F21
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130...    31   0.89 
06_03_1153 - 28047125-28047751                                         30   2.0  
09_02_0603 - 11150739-11150746,11150791-11151340                       30   2.7  
04_04_0746 + 27726736-27727118,27727518-27727544,27728042-277281...    29   3.6  
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544...    29   6.2  
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554...    29   6.2  
09_02_0256 - 6350559-6350573,6351025-6351762                           28   8.3  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.3  

>08_01_0162 -
           1302497-1302787,1304608-1305271,1305380-1306927,
           1307360-1308768
          Length = 1303

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -3

Query: 228 SIFLKSFHLGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDANAKND 49
           SI     HLG G  L+ PR   +     K+  K +LP+  S G F    T SF+ +  + 
Sbjct: 219 SILAMRLHLGYG--LSGPRHRPDYNLSYKVDLKSVLPELVSVG-FSASTTTSFELHQLHS 275

Query: 48  QILRNSL 28
               +SL
Sbjct: 276 WYFSSSL 282


>06_03_1153 - 28047125-28047751
          Length = 208

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 800 PPXXFFFCGGXXXPPPXGXXPPPPPFF 720
           PP    FC     PPP    PPPPP F
Sbjct: 9   PPPPAIFC-----PPPLSPPPPPPPIF 30


>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -1

Query: 836 FXPXXXXGXGXXPPXXFFFCGGXXXPPPXGXXPPPPP 726
           F P    G    PP   FF      PPP    PPPPP
Sbjct: 53  FVPLPQSGVPPPPPLGSFFV-----PPPQSRVPPPPP 84



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 776 GGXXXPPPXGXXPPPPP 726
           G    PPP G  PPPPP
Sbjct: 33  GNFALPPPFGFPPPPPP 49


>04_04_0746 +
           27726736-27727118,27727518-27727544,27728042-27728126,
           27729252-27729809
          Length = 350

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 779 CGGXXXPPPXGXXPPPPP 726
           CG    PPP    PPPPP
Sbjct: 27  CGKCPTPPPPALPPPPPP 44


>04_04_0137 -
           23053148-23053798,23053911-23054146,23054268-23054458,
           23054587-23056010
          Length = 833

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 779 CGGXXXPPPXGXXPPPPP 726
           CG    PPP    PPPPP
Sbjct: 390 CGPAVPPPPPPTPPPPPP 407


>03_02_0784 -
           11154395-11154888,11155284-11155360,11155447-11155497,
           11155599-11155672,11156127-11156215,11156533-11156618,
           11157570-11157669,11158540-11158622,11158776-11159194
          Length = 490

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 779 CGGXXXPPPXGXXPPPPP 726
           CG    PPP    PPPPP
Sbjct: 422 CGPPYAPPPPPPPPPPPP 439


>09_02_0256 - 6350559-6350573,6351025-6351762
          Length = 250

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 779 CGGXXXPPPXGXXPPPPP 726
           CGG   P   G  PPPPP
Sbjct: 2   CGGALIPNDYGDKPPPPP 19


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 776 GGXXXPPPXGXXPPPPP 726
           G    PPP G  PPPPP
Sbjct: 352 GPPPPPPPKGPSPPPPP 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,032,760
Number of Sequences: 37544
Number of extensions: 325601
Number of successful extensions: 1936
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1724
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)