Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_F21
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 39 0.005
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 31 0.79
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 31 0.79
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.0
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.2
AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical ... 29 3.2
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 29 4.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 7.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 7.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 7.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 7.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 7.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 7.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 9.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 9.7
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 28 9.7
AL033514-20|CAA22086.1| 169|Caenorhabditis elegans Hypothetical... 28 9.7
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 815 GXGXXPPXXFFFCGGXXXPPPX-GXXPPPPPFF 720
G G PP F GG PPP G PPPPP F
Sbjct: 79 GPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMF 111
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -1
Query: 830 PXXXXGXGXXPPXXFFFCGGXXXPPPXGXXPPPPP 726
P G PP GG PPP PPPPP
Sbjct: 86 PPPMFAGGIPPPPPMM--GGIPPPPPMFGAPPPPP 118
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 31.5 bits (68), Expect = 0.79
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 776 GGXXXPPPXGXXPPPPP 726
GG PPP G PPPPP
Sbjct: 787 GGIPPPPPLGIIPPPPP 803
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 31.5 bits (68), Expect = 0.79
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 776 GGXXXPPPXGXXPPPPP 726
GG PPP G PPPPP
Sbjct: 787 GGIPPPPPLGIIPPPPP 803
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 773 GXXXPPPXGXXPPPPPFF 720
G PPP G PPPPP F
Sbjct: 294 GFFPPPPRGHFPPPPPHF 311
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 773 GXXXPPPXGXXPPPPPFF 720
G PPP G PPPPP F
Sbjct: 294 GFFPPPPRGHFPPPPPHF 311
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Frame = -1
Query: 836 FXPXXXXGXGXXPPXXFFFCGGXXXPPP-------XGXXPPPPP 726
F P G PP + GG PPP G PPPPP
Sbjct: 325 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Frame = -1
Query: 836 FXPXXXXGXGXXPPXXFFFCGGXXXPPP-------XGXXPPPPP 726
F P G PP + GG PPP G PPPPP
Sbjct: 335 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378
>AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical
protein Y52B11A.5 protein.
Length = 219
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 785 FFCGGXXXPPPXGXXPPPPP 726
++ GG PPP PPPPP
Sbjct: 21 YYGGGKGRPPPARPPPPPPP 40
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 773 GXXXPPPXGXXPPPPP 726
G PPP G PPPPP
Sbjct: 139 GMYPPPPTGQYPPPPP 154
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 776 GGXXXPPPXGXXPPPPP 726
G PPP G PPPPP
Sbjct: 757 GPPPPPPPPGGCPPPPP 773
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 761 PPPXGXXPPPPP 726
PPP G PPPPP
Sbjct: 763 PPPGGCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 776 GGXXXPPPXGXXPPPPP 726
G PPP G PPPPP
Sbjct: 757 GPPPPPPPPGGCPPPPP 773
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 761 PPPXGXXPPPPP 726
PPP G PPPPP
Sbjct: 763 PPPGGCPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 776 GGXXXPPPXGXXPPPPP 726
G PPP G PPPPP
Sbjct: 340 GPPPPPPPPGGCPPPPP 356
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 761 PPPXGXXPPPPP 726
PPP G PPPPP
Sbjct: 346 PPPGGCPPPPPP 357
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 809 GXXPPXXFFFCGGXXXPPPXGXXPPPPP 726
G PP GG PP G PPPPP
Sbjct: 278 GSPPPPP---AGGSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 809 GXXPPXXFFFCGGXXXPPPXGXXPPPPP 726
G PP GG PP G PPPPP
Sbjct: 299 GSPPPPP---AGGSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 809 GXXPPXXFFFCGGXXXPPPXGXXPPPPP 726
G PP GG PP G PPPPP
Sbjct: 284 GSPPPPP---AGGSPPPPRAGSPPPPPP 308
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 165 TNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDAN 61
T+A ++K + KFI+ GEF +I+FD N
Sbjct: 12112 TSAPGEVKKKKKFIISAISQDGEFSDAESITFDEN 12146
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 165 TNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDAN 61
T+A ++K + KFI+ GEF +I+FD N
Sbjct: 12112 TSAPGEVKKKKKFIISAISQDGEFSDAESITFDEN 12146
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 761 PPPXGXXPPPPP 726
PPP G PPPPP
Sbjct: 88 PPPHGLGPPPPP 99
>AL033514-20|CAA22086.1| 169|Caenorhabditis elegans Hypothetical
protein Y75B8A.20 protein.
Length = 169
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 785 FFCGGXXXPPPXGXXPPPPP 726
FF GG PP PPPPP
Sbjct: 21 FFNGGCGCQPPPICLPPPPP 40
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,720,074
Number of Sequences: 27780
Number of extensions: 279248
Number of successful extensions: 1168
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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