Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_F19
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.26
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 31 0.26
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 28 1.4
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 28 1.8
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 27 2.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.2
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 27 4.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 4.2
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 7.3
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 25 9.7
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.26
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = -1
Query: 553 VTPKTKPARKXPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMT-VSFTVIAP-LT 380
VTP P S PP +T T S P +++ S T + T S T + P +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 379 PSNTTGTLSPP 347
P++T+ T +PP
Sbjct: 361 PTSTSSTSTPP 371
Score = 29.5 bits (63), Expect = 0.59
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -1
Query: 547 PKTKPARKXPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSFTVIAPLTPS- 374
P T + S P P T+ TS S PP NST + +T V + S T P S
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPPPPAST 322
Query: 373 NTTGTLSPP 347
++TGT S P
Sbjct: 323 SSTGTSSSP 331
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = -1
Query: 553 VTPKTKPARKXPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSFTVIAPLTPS 374
VTP P S PP +T T S P +++ S T + T + T P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412
Query: 373 NTTGTLSPPCT 341
+ S P T
Sbjct: 413 VPPTSSSTPLT 423
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -1
Query: 514 SLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSFT----VIAPLTPSNTTGTLSPP 347
S+PP +T + + PP ++ST + T +V +T PL +N T + S P
Sbjct: 398 SIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVP 457
Query: 346 CT 341
T
Sbjct: 458 YT 459
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 30.7 bits (66), Expect = 0.26
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 493 TTEFTSRSCPPRTNST*SSITRKVLVMTVSFTVIAPLTPSNTTGTLSPPCT 341
+T TS PP T+ ++ T + T + P T NTT T +PP T
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTT 113
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -1
Query: 511 LPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSFTVIAPLTPSNTTGTLSPPCT 341
+PP + T+ + PP T+ ++ + + T P T N+T T+ PP T
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTT 126
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -1
Query: 553 VTPKTKPARKXPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSFTVIAPLTPS 374
V P + ++PP T+ T+ + PP T+ ++ T S T + P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 373 NTTGTLSPPCT 341
T T+ PP T
Sbjct: 128 VNTTTVVPPTT 138
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 233 LRCAPRLHGLRWRPYLHQVS 292
L A +LHG+RW Y H+VS
Sbjct: 182 LAFASKLHGMRWFMYTHKVS 201
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 27.9 bits (59), Expect = 1.8
Identities = 35/132 (26%), Positives = 49/132 (37%), Gaps = 4/132 (3%)
Frame = -3
Query: 593 KLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRV--YFKIMSTEDKQYLKLDNTKGF 420
K ID+ I +G K S+ F P E +R+ K++ ED LD K
Sbjct: 219 KDIDENEEVTINYGSEKGSAEFLFSYGFLPEPEGDRITNVMKLLIPEDSND-SLDLAKRR 277
Query: 419 SDDRIIYGDSTADTFKHHWYLEPSMYEXDVMXXVYNRE--YNSVMTLDEDMAANEDREAL 246
S + +D+ W+ P ++ V N E N M DE A D E
Sbjct: 278 SCKTPPMIEFVSDSSGELWWHAPFLF-----FSVLNVEDFTNFKMVCDESKAQTVDWEFE 332
Query: 245 GHSGEVSGYPQL 210
G V P+L
Sbjct: 333 GQKCSVEDLPKL 344
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = -3
Query: 422 FSDDRIIYGDSTADTFKHHWYLEP----SMYEXDVMXXVYNR--EYNSVMTL 285
FSDDR+ GD+ + +Y++ +MYE + Y YN V+ L
Sbjct: 83 FSDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 496 KTTEFTSRSCPPRTNST*SSITRKVLVMTVSFTVIAPLTPSNTTGTLSPPCT 341
+TTE T+ P T ++ S T ++ T T I P+ P N + ++S P T
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAPPT 901
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 339 FVHGGLKVPVVFEGVSGAITVNDTVIT 419
F H + V G+ GAIT++D++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 366 VVFEGVSGAITVNDTVITKTFRVIELQVLFVLGGHDLEVNSVVFQH 503
++ EG+S +VN+T F V+ ++ DLEV S Q+
Sbjct: 1383 MIKEGLSSKPSVNETFSKYVFPVLFAYYDIIMSAEDLEVRSRALQN 1428
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 466 PPRTNST*SSITRKVLVMTVSFTVIAPLTPSNTTGTLS 353
PPR N T + VL SF PSN+ TL+
Sbjct: 324 PPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLN 361
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 789 GKEGEVIRKPEXFDXNGKRNTMXXAYQLWTKDGKEXVKFXFPI 661
G+E E I K +D N R + Y + +DG E ++ F I
Sbjct: 88 GEEDEGISKGVPYDENLIREQLARNYAFFGEDGMERLRNSFVI 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,130
Number of Sequences: 5004
Number of extensions: 54765
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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