Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F19
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    32   0.42 
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    28   9.1  
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st...    28   9.1  
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st...    28   9.1  
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st...    28   9.1  

>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 556 SVTPKTKPARKXPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSFTVIAPLTP 377
           +VT  T        ++P    TT   S + PP  ++T + +T+      V  T IAP+T 
Sbjct: 407 NVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTM 466

Query: 376 SNTT 365
            +TT
Sbjct: 467 PSTT 470


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 547 PKTKPARKXPGSLPPCWKTTE--FTSRSCPPRTNST 446
           PKT+P    P ++P CW+     F     PPR N+T
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNT 453


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1613

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 512 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGFSDDRIIYGD 393
           F P+   N +  KI S+ DK+    +NT  F++++ + GD
Sbjct: 146 FNPIAPRNEIE-KIESSYDKEEQSEENTSFFTNEKTLEGD 184


>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           b protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 512 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGFSDDRIIYGD 393
           F P+   N +  KI S+ DK+    +NT  F++++ + GD
Sbjct: 146 FNPIAPRNEIE-KIESSYDKEEQSEENTSFFTNEKTLEGD 184


>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           a protein.
          Length = 1613

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 512 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGFSDDRIIYGD 393
           F P+   N +  KI S+ DK+    +NT  F++++ + GD
Sbjct: 146 FNPIAPRNEIE-KIESSYDKEEQSEENTSFFTNEKTLEGD 184


>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 1 protein.
          Length = 1616

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 512 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGFSDDRIIYGD 393
           F P+   N +  KI S+ DK+    +NT  F++++ + GD
Sbjct: 146 FNPIAPRNEIE-KIESSYDKEEQSEENTSFFTNEKTLEGD 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,233
Number of Sequences: 27780
Number of extensions: 315370
Number of successful extensions: 907
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)