Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F18
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   1.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   4.6  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   6.1  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   6.1  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   8.1  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 164 IKRPCPN-FDLNCIREYFSRNSQCQLVRGPVPDP 262
           I+ PC + F  NCI+ +   N  C + R PV DP
Sbjct: 410 IQLPCKHYFHENCIKPWLRVNGTCAICRAPV-DP 442


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 587 DVTKNFSIAQL*VANARKYSG*TLAFHSQLPMRHFLQLALWLSYC 453
           D+TK   I+++   ++  Y    L F+S L  RHF+ L L   +C
Sbjct: 178 DLTKKQLISKM--DSSYNYDTSPLEFNSWLVFRHFVDLILMCDFC 220


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 167 KRPCPN-FDLNCIREYFSRNSQCQLVRGPVP 256
           K PC + F  NC++++   +  C L R  VP
Sbjct: 124 KMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 224 SQCQLVRGPVPDPLPLNYYRVYIPNSNLTVEY 319
           S   L  G VP  +P +YY +Y P   +   Y
Sbjct: 488 SMATLPPGAVPTSIPQSYYPIYSPEMAMPQSY 519


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 257 DPLPLNYYRVYIPNSNLTVEYHDVKTRGFD 346
           +P  LNY+RV++P+  + +    ++ R FD
Sbjct: 486 EPHELNYFRVFLPSGKILIHRLQLRER-FD 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,826
Number of Sequences: 5004
Number of extensions: 63429
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)