Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F18
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    29   3.7  
12_02_0346 - 17776871-17781445                                         29   6.5  
12_02_0343 - 17748882-17753396                                         29   6.5  
11_01_0809 + 7201431-7202243,7202646-7203347,7216678-7216755           29   6.5  

>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 109 ASAVASGENLDPADDPKKHQKTLSELRLELHS*IFLKKFSMSISKGTCTRSTT 267
           A   A+G+N+    +P+  + T++ L  E HS +  +   +   +GT T+  +
Sbjct: 783 AYITATGKNISSLPEPQSLEVTINSLICEKHSRLLQRPLDLVCKRGTITQKAS 835


>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 819 IKYINWNSFXLRG*LLIPKSQE 754
           IKY+NW++F L G L + + QE
Sbjct: 885 IKYVNWDTFPLPGKLYMTEGQE 906


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 819 IKYINWNSFXLRG*LLIPKSQE 754
           IKY+NW++F L G L + + QE
Sbjct: 886 IKYVNWDTFPLPGKLYMTEGQE 907


>11_01_0809 + 7201431-7202243,7202646-7203347,7216678-7216755
          Length = 530

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +1

Query: 25  YREFLKI*FYFFKMWFEQCLCLSVLGLIASAVASGENLDPADDPKKHQKTLSELRLE--L 198
           Y EFL +      M   + LC+++LG +     S + L+  +D  KH +   +L  E   
Sbjct: 418 YWEFLDVRHAIDVMHLTKNLCVNLLGFLGVYGKSKDTLEARND-LKHMEQRGDLHPEPKE 476

Query: 199 HS*IFLKKFSMSISKGTCTRSTTFKLLQSIYTE 297
               +L   S ++SK    + + F+ L+SI TE
Sbjct: 477 KGSHYLSPASYTLSK--AEKESMFECLESIKTE 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,183,215
Number of Sequences: 37544
Number of extensions: 374068
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)