Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F18
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 176  CPNFDLNCIREYFSRNSQCQLVRGPVPDPL-PLNYYRVYIPNSNL 307
            C +  +NC       +  CQ+  GP  D L P  Y  VYIPNS L
Sbjct: 1137 CDSNQVNCCPVVRYTDESCQV--GPAIDGLCPPGYVVVYIPNSPL 1179


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 176 CPNFDLNCIREYFSRNSQCQLVRGPVPDPL-PLNYYRVYIPNSNL 307
           C +  +NC       +  CQ+  GP  D L P  Y  VYIPNS L
Sbjct: 479 CDSNQVNCCPVVRYTDESCQV--GPAIDGLCPPGYVVVYIPNSPL 521


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 176 CPNFDLNCIREYFSRNSQCQLVRGPVPDPL-PLNYYRVYIPNSNL 307
           C +  +NC       +  CQ+  GP  D L P  Y  VYIPNS L
Sbjct: 479 CDSNQVNCCPVVRYTDESCQV--GPAIDGLCPPGYVVVYIPNSPL 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,274,801
Number of Sequences: 27780
Number of extensions: 351265
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)