Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F16
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.6  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   8.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
 Frame = +1

Query: 646 PPXPQTAREPEKTXXXXXXXXQXGPP--PPXTXXXXPIX---PXXSSKGGXXPAXALKXN 810
           PP PQ+   P  +           P   PP      PI    P  +       +     +
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 811 NGAVXPXLKPXKAPPPXVXKPXKXYPDSPXGXXPPSXKXXN 933
             +  P + P   PPP    P       P    PP+    N
Sbjct: 190 LPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPN 230


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 26/99 (26%), Positives = 33/99 (33%), Gaps = 2/99 (2%)
 Frame = +1

Query: 607 INPGHXPXQXQMNPPXPQTAREPEKTXXXXXXXXQXGP--PPPXTXXXXPIXPXXSSKGG 780
           +NP   P   Q   P  Q+A +P             G   P P T    P  P     G 
Sbjct: 455 MNPSSLPPWQQ---PTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPG- 510

Query: 781 XXPAXALKXNNGAVXPXLKPXKAPPPXVXKPXKXYPDSP 897
              A  +   N +  P + P  A PP +  P   YP  P
Sbjct: 511 ---APGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVP 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,394
Number of Sequences: 5004
Number of extensions: 15475
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)