Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F16
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.29 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.29 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.29 
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   6.3  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   6.3  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   6.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   6.3  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   6.3  
Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 26/115 (22%), Positives = 35/115 (30%)
 Frame = +1

Query: 574 PHPXRGXXVXPINPGHXPXQXQMNPPXPQTAREPEKTXXXXXXXXQXGPPPPXTXXXXPI 753
           P P +G      +    P     +PP P+T   P             G PPP      P 
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299

Query: 754 XPXXSSKGGXXPAXALKXNNGAVXPXLKPXKAPPPXVXKPXKXYPDSPXGXXPPS 918
            P      G  P  +L        P      +PPP   +  +    SP    PP+
Sbjct: 300 PPPPR---GSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT 351


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 26/115 (22%), Positives = 35/115 (30%)
 Frame = +1

Query: 574 PHPXRGXXVXPINPGHXPXQXQMNPPXPQTAREPEKTXXXXXXXXQXGPPPPXTXXXXPI 753
           P P +G      +    P     +PP P+T   P             G PPP      P 
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320

Query: 754 XPXXSSKGGXXPAXALKXNNGAVXPXLKPXKAPPPXVXKPXKXYPDSPXGXXPPS 918
            P      G  P  +L        P      +PPP   +  +    SP    PP+
Sbjct: 321 PPPPR---GSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT 372


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 26/115 (22%), Positives = 35/115 (30%)
 Frame = +1

Query: 574 PHPXRGXXVXPINPGHXPXQXQMNPPXPQTAREPEKTXXXXXXXXQXGPPPPXTXXXXPI 753
           P P +G      +    P     +PP P+T   P             G PPP      P 
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305

Query: 754 XPXXSSKGGXXPAXALKXNNGAVXPXLKPXKAPPPXVXKPXKXYPDSPXGXXPPS 918
            P      G  P  +L        P      +PPP   +  +    SP    PP+
Sbjct: 306 PPPPR---GSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT 357


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 29/122 (23%), Positives = 37/122 (30%), Gaps = 2/122 (1%)
 Frame = +1

Query: 559 AKRXHPHPXRGXXVXPINPGHXPXQXQMNPPXP-QTAREPEKTXXXXXXXXQXGPPPPXT 735
           A    P P       P+NP   P       P P   + +P+ +          GPP P  
Sbjct: 94  APSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPSVEPSEDHQPSGPPSPGP 153

Query: 736 XXXXPIXPXXSSKGGXXPAXALKXNNGAVXPXLKPXKAPPPXVXKPXKXYP-DSPXGXXP 912
                  P  S +    P  +   + G V P   P    P     P    P D P    P
Sbjct: 154 VDPSE-DPQPSVEPSEDPQPSGPPSPGPVDPSEDP---QPSGSSSPGPVDPSDEPSPSGP 209

Query: 913 PS 918
           PS
Sbjct: 210 PS 211


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = +2

Query: 719 PPPPXRXXXXQSXPXFLQRGAXTPPXX*KXITGPXPPX*NPXRPPPP 859
           PPPP         P F   G   PP     I  P P    P  PPPP
Sbjct: 75  PPPPGPGGIPPPPPMFAG-GIPPPPPMMGGIPPPPPMFGAPPPPPPP 120


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 27/108 (25%), Positives = 34/108 (31%), Gaps = 1/108 (0%)
 Frame = +1

Query: 577 HPXRGXXVXPINPGHXPXQXQMNPPXPQTAREPEKTXXXXXXXXQXGPPPPXTXXXXPIX 756
           +P     V    P   P Q  +  P P  A  P+          Q  PPPP      P  
Sbjct: 87  YPQNAVPVPAPPPAPYP-QHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPP 145

Query: 757 PXXSSKGGXXPA-XALKXNNGAVXPXLKPXKAPPPXVXKPXKXYPDSP 897
           P         PA  +   ++ A  P      APPP    P +  P  P
Sbjct: 146 PHYPP---PPPAPHSAYIDHSAPRPAYIEHSAPPPQPQYPQQQPPQYP 190


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
 Frame = +1

Query: 718 PPPPXTXXXXPIX---PXXSSKGGXXPAXALKXNNGAVXPXLKPXKAPPPXVXKPXKXYP 888
           PPPP      PI    P     GG  P      + G   P   P   PPP    P   + 
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPI-----SGGPPPPPPPPGGCPPPPPPPPPGGFK 781

Query: 889 DSPXGXXPP 915
             P    PP
Sbjct: 782 GGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
 Frame = +1

Query: 718 PPPPXTXXXXPIX---PXXSSKGGXXPAXALKXNNGAVXPXLKPXKAPPPXVXKPXKXYP 888
           PPPP      PI    P     GG  P      + G   P   P   PPP    P   + 
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPI-----SGGPPPPPPPPGGCPPPPPPPPPGGFK 781

Query: 889 DSPXGXXPP 915
             P    PP
Sbjct: 782 GGPPPPPPP 790


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
 Frame = +2

Query: 716 APPPPXRXXXXQSXPXFLQRG-AXTPPXX*KXITGPX--PPX*NPXRPPPPXL 865
           APPPP R       P   +   +  PP     I  P   PP   P  PPPP L
Sbjct: 473 APPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPPAL 525


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
 Frame = +1

Query: 718 PPPPXTXXXXPIX---PXXSSKGGXXPAXALKXNNGAVXPXLKPXKAPPPXVXKPXKXYP 888
           PPPP      PI    P     GG  P      + G   P   P   PPP    P   + 
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPI-----SGGPPPPPPPPGGCPPPPPPPPPGGFK 364

Query: 889 DSPXGXXPP 915
             P    PP
Sbjct: 365 GGPPPPPPP 373


>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
 Frame = +1

Query: 718 PPPPXTXXXXPIXPXXSSKGGXXPAXALKXNNGAVXPXLKPXK--APPPXVXKPXKXYPD 891
           PPPP      P  P   +     PA        A  P   P +  APPP   +     P 
Sbjct: 177 PPPPRPPPQEPPKPVEQAAPPPPPAPMPVPVEKAPEPVPAPVEQIAPPPAPVQDPAPAPV 236

Query: 892 SPXGXXPPS 918
            P    PPS
Sbjct: 237 EPSDPAPPS 245


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = +1

Query: 574 PHPXRGXXVXPINPGHXPXQXQMNPPXP-QTAREPEKTXXXXXXXXQXGPPPPXTXXXXP 750
           P+P  G    P+ PG  P Q +M PP P Q A  P           + G P P +    P
Sbjct: 810 PYPYPGG---PVPPG--PPQNRMPPPPPAQGAPSPSGAAGSNGKQPRYGTPAPPSRASAP 864

Query: 751 IXPXXSS 771
                SS
Sbjct: 865 TPQPLSS 871


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,990,356
Number of Sequences: 27780
Number of extensions: 140241
Number of successful extensions: 368
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)