Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_F13
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 169 3e-43
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 167 1e-42
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 32 0.084
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 31 0.15
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 2.4
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 4.2
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 7.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 7.3
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 169 bits (412), Expect = 3e-43
Identities = 84/133 (63%), Positives = 103/133 (77%), Gaps = 2/133 (1%)
Frame = +2
Query: 320 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 499
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 500 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELXEICYDVLGLLDKHLIPKASNPXSKV 673
WR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ SKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 674 FYLKMKGDYYRYL 712
FY KMKGDYYRYL
Sbjct: 121 FYYKMKGDYYRYL 133
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 167 bits (407), Expect = 1e-42
Identities = 81/132 (61%), Positives = 101/132 (76%), Gaps = 2/132 (1%)
Frame = +2
Query: 323 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 502
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 503 RVISSIEQKTE--GSERKQQMAKEYRVKVEKELXEICYDVLGLLDKHLIPKASNPXSKVF 676
R++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ SKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 677 YLKMKGDYYRYL 712
Y KMKGDYYRYL
Sbjct: 123 YYKMKGDYYRYL 134
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 32.3 bits (70), Expect = 0.084
Identities = 25/104 (24%), Positives = 43/104 (41%)
Frame = +2
Query: 296 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 475
I S+ S S EEL+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 476 VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELXEIC 607
+R+ + +E+ + EY +E+ L + C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.5 bits (68), Expect = 0.15
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 323 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 493
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 494 SSWRVIS 514
S+W S
Sbjct: 62 STWATFS 68
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 2.4
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +2
Query: 329 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 508
+K+E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374
Query: 509 ISSIEQKTEGSE---RKQQMAKEYRVKVEKEL 595
S E + E SE R+Q++ +E R + EK+L
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDL 406
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 470 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 586
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 458 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 592
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 352 TLHQFFLVDGHRGRWKRTNSLMPELFKPAVLE 257
TL FL DG RWK + P V+E
Sbjct: 52 TLKDEFLADGLESRWKTNGEKSSSIRYPLVME 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,782
Number of Sequences: 5004
Number of extensions: 62742
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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