Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F12
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969...    30   2.1  
04_03_0096 + 11158108-11159083,11159116-11159744                       29   3.8  
01_03_0018 - 11686420-11687460                                         29   6.6  
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588...    28   8.7  

>01_06_1202 +
           35396165-35396260,35396398-35396549,35396694-35396938,
           35397044-35398350
          Length = 599

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
 Frame = +3

Query: 60  SSLSTNTTMFLLYFLIVVALVSADVHDKELKIEENP-RVYCGRH-LANARMILCYDTVEK 233
           +S S++  +FLL   ++  L  A+VH  E  ++E P +  C  H +      L   T+E 
Sbjct: 2   ASSSSSRLLFLLSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEV 61

Query: 234 RAQSYLDANIISSGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLVDECCLKP 389
           R    +  N+++    +    ++  +   R F        GP  V +C +KP
Sbjct: 62  REGDTVVINVVNHAQYN----VTIHWHGIRQFRTGWAD--GPEFVTQCPIKP 107


>04_03_0096 + 11158108-11159083,11159116-11159744
          Length = 534

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 153 IEENPRVYCGRHLANARMILCYDTVEKRAQSYLDANIISSGDLS 284
           ++  P V+ GRH    R +     ++    SY D N++ S DLS
Sbjct: 168 VDSEPPVFPGRHYELPRSLYSCVALQTLCLSYCDLNLLESIDLS 211


>01_03_0018 - 11686420-11687460
          Length = 346

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 222 TVEKRAQSYLDANIISSGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLV 368
           T+E   +   +A     G +  WP   S    TR   + E   RG GLV
Sbjct: 291 TIELMEEPMRNAEFFRRGVVGGWPNYLSPEMATRIDEITESKFRGSGLV 339


>01_03_0271 +
           14454681-14456949,14457222-14457476,14458800-14458864,
           14459053-14459171,14459270-14459324
          Length = 920

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 129 DVHDKE--LKIEENPRVYCGRHLANARMILCYDT 224
           +VHD +  LK+  N RV+CG H+        +DT
Sbjct: 814 EVHDPQIPLKLAPNQRVFCGLHMEIVLEAYMFDT 847


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,751,946
Number of Sequences: 37544
Number of extensions: 359222
Number of successful extensions: 687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)