Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F09
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    32   0.095
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   6.2  

>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 513 GVAFSRSGDRLGHXGGYYDKFIT 581
           GVAF     RLGH  GYYD +I+
Sbjct: 128 GVAFDEKLSRLGHGKGYYDNYIS 150


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 334 RGAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGKD 456
           R     +PQ    R+ ++H  T +++ M KT   +S   KD
Sbjct: 584 RSLKTIIPQVNPRRLVLIHASTEEKEDMKKTCASLSAFTKD 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,872
Number of Sequences: 5004
Number of extensions: 62237
Number of successful extensions: 137
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)