Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F09
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1025 + 23365590-23365698,23366288-23366425,23366491-233666...    49   4e-06
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503...    29   3.7  
03_02_0685 + 10401281-10401463,10403296-10403700                       29   3.7  

>07_03_1025 +
           23365590-23365698,23366288-23366425,23366491-23366649,
           23366768-23366809,23366885-23366930,23367027-23367147
          Length = 204

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
 Frame = +1

Query: 142 KALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTE--NEIDTAPL 315
           K  LR+E+   + ALT E++  + Q +   ++N SW+K S R+  Y+S     E+DT+ +
Sbjct: 14  KRALRSEVRRALRALTPEQRASEDQAIQNAILNSSWFKESKRLCAYISCAQLREVDTSKV 73

Query: 316 IKHI----QARGAA--AFVPQY--AGGRMRMLHLETGDE 408
           +  +       G A   +VP+       MRML + T D+
Sbjct: 74  LSEVLSPNSEHGHAKDLYVPRVEDKNRNMRMLKITTMDD 112


>03_06_0285 +
           32848085-32848988,32849057-32849245,32850136-32850311,
           32850569-32851141
          Length = 613

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +1

Query: 109 GRMSPIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMST 288
           G +   KP  A A L++   A  A    E+K+   +IV    ++ SW +   R+A+ +  
Sbjct: 243 GGVEGAKPPDAHAFLQH--VATFAVAEKEDKELYRRIV----VSFSWRRQMPRLAITLGL 296

Query: 289 ENEID 303
           E+E+D
Sbjct: 297 EDEMD 301


>03_02_0685 + 10401281-10401463,10403296-10403700
          Length = 195

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +1

Query: 112 RMSPIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSS---RIALYM 282
           R+     +    LLRN++ A +A L  ++    S  +Y  V    WY+      R  LYM
Sbjct: 26  RLEQFMRSHVSRLLRNDLLAVLAELLRQDHVLLSMKIYSVVRKEIWYRPDMYFYRDMLYM 85

Query: 283 STENE 297
              N+
Sbjct: 86  LARNK 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,819,160
Number of Sequences: 37544
Number of extensions: 461784
Number of successful extensions: 1249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)