Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F08
         (1380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    34   0.21 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    34   0.21 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    34   0.21 
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    33   0.63 
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    32   1.1  
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     31   2.5  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    31   2.5  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    31   2.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.8  
AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...    29   5.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.8  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   7.7  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -1

Query: 729 PPXPPXXPXPPLXXLPPSGRXSXXPRAXXPPSPXVXLXXPP 607
           PP PP    PP    PP+G     PRA  PP P      PP
Sbjct: 272 PPPPPTGSPPP----PPAGGSPPPPRAGSPPPPPPPRGSPP 308



 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = -1

Query: 729 PPXPPXXPXPPLXXLPPSGRXSXXPRAXXPPSPXVXLXXPP 607
           PP PP    PPL     SG     P A  PP P      PP
Sbjct: 238 PPPPPPKGSPPLAG---SGSPPPPPAAGSPPPPRTGSPPPP 275


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -1

Query: 729 PPXPPXXPXPPLXXLPPSGRXSXXPRAXXPPSPXVXLXXPP 607
           PP PP    PP    PP+G     PRA  PP P      PP
Sbjct: 293 PPPPPTGSPPP----PPAGGSPPPPRAGSPPPPPPPRGSPP 329



 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = -1

Query: 729 PPXPPXXPXPPLXXLPPSGRXSXXPRAXXPPSPXVXLXXPP 607
           PP PP    PPL     SG     P A  PP P      PP
Sbjct: 259 PPPPPPKGSPPLAG---SGSPPPPPAAGSPPPPRTGSPPPP 296


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -1

Query: 729 PPXPPXXPXPPLXXLPPSGRXSXXPRAXXPPSPXVXLXXPP 607
           PP PP    PP    PP+G     PRA  PP P      PP
Sbjct: 278 PPPPPTGSPPP----PPAGGSPPPPRAGSPPPPPPPRGSPP 314



 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = -1

Query: 729 PPXPPXXPXPPLXXLPPSGRXSXXPRAXXPPSPXVXLXXPP 607
           PP PP    PPL     SG     P A  PP P      PP
Sbjct: 244 PPPPPPKGSPPLAG---SGSPPPPPAAGSPPPPRTGSPPPP 281


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 32.7 bits (71), Expect = 0.63
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +2

Query: 608 GGXXRXTKGEGGXXARGXXDXRPEGGXXXXGGXGXXGGXGG 730
           GG  R   G G   + G  D    GG    GG G  GG GG
Sbjct: 137 GGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGG 177



 Score = 29.5 bits (63), Expect = 5.8
 Identities = 27/105 (25%), Positives = 29/105 (27%)
 Frame = +3

Query: 87  GGXXKXXGDXXGEGXKGGXXRXGXXVRXKEXEXXXXXKEXERGGXGRXGXXXXXGTIGXX 266
           GG     G+  G G  GG    G     +             GG    G     G  G  
Sbjct: 73  GGGGNWGGNGGGRGDWGGNGGGGRGGGGR----GDWGGNNNGGGGNWGGGGNNDGGWGGN 128

Query: 267 XXXGXXERXXXGARXXXRXPXGEKGXGGXRXXXXQKXXGGGGRXG 401
              G   R   G     R P G  G G           GGGGR G
Sbjct: 129 NGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGG 173


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 602 RXGGXXRXTKGEGGXXARGXXDXRPEGG-XXXXGGXGXXGGXGG 730
           R GG  R   G G     G  D R +GG     GG G  GG GG
Sbjct: 565 RSGGGYRGRGGRGNGQRFGGRDHRYQGGSGNGGGGNGGGGGFGG 608


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 19/63 (30%), Positives = 21/63 (33%)
 Frame = -3

Query: 400 PXRPPPPSXFXXXXXLXPPXPFSPXGXLXXXRAPXXXLSXXPXXXLXPIVPXXXXXPLRP 221
           P  PPPP          PP P  P G +    AP       P   L P+       P  P
Sbjct: 198 PHAPPPPVPLTSNIPQAPPAPPPPIGGI----APVNAHGAPPPPPLPPVGAGAPPPPPPP 253

Query: 220 XPP 212
            PP
Sbjct: 254 PPP 256


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 19/63 (30%), Positives = 21/63 (33%)
 Frame = -3

Query: 400 PXRPPPPSXFXXXXXLXPPXPFSPXGXLXXXRAPXXXLSXXPXXXLXPIVPXXXXXPLRP 221
           P  PPPP          PP P  P G +    AP       P   L P+       P  P
Sbjct: 184 PHAPPPPVPLTSNIPQAPPAPPPPIGGI----APVNAHGAPPPPPLPPVGAGAPPPPPPP 239

Query: 220 XPP 212
            PP
Sbjct: 240 PPP 242


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 19/63 (30%), Positives = 21/63 (33%)
 Frame = -3

Query: 400 PXRPPPPSXFXXXXXLXPPXPFSPXGXLXXXRAPXXXLSXXPXXXLXPIVPXXXXXPLRP 221
           P  PPPP          PP P  P G +    AP       P   L P+       P  P
Sbjct: 184 PHAPPPPVPLTSNIPQAPPAPPPPIGGI----APVNAHGAPPPPPLPPVGAGAPPPPPPP 239

Query: 220 XPP 212
            PP
Sbjct: 240 PPP 242


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -1

Query: 141 PPPXPPPXYXPXFXXNXPPXVAXXGXGXPLXPXXP 37
           PPP PPP   P      PP     G   P  P  P
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -1

Query: 141 PPPXPPPXYXPXFXXNXPPXVAXXGXGXPLXPXXP 37
           PPP PPP   P      PP     G   P  P  P
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776


>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +2

Query: 608 GGXXRXTKGEGGXXARGXXDXRPEGGXXXXGGXGXXGGXGG 730
           GG  R  +G GG       D    GG    GG G  GG  G
Sbjct: 151 GGRGRGGRGRGGDRGGRGSDRGGRGGFGRGGGGGFRGGDRG 191


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -1

Query: 141 PPPXPPPXYXPXFXXNXPPXVAXXGXGXPLXPXXP 37
           PPP PPP   P      PP     G   P  P  P
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = -1

Query: 732  LPPXPPXXPXPPLXXLPPSGRXSXXPRAXXPPSPXVXLXXPP 607
            L P PP  P PP     P+G     P      SP + L  PP
Sbjct: 1352 LTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPP 1393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,317
Number of Sequences: 27780
Number of extensions: 226881
Number of successful extensions: 1546
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3902504250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)