Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F07
         (1068 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   5.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   5.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   5.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   5.3  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
 Frame = -1

Query: 315 PPXXPPPPPPLXXXXXXFXPXP----PPSXXP 232
           P   PPPPP        + P P    PP+  P
Sbjct: 159 PLHYPPPPPVYTHHYARYHPYPNFGVPPAGIP 190


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 760 LAPPPXXTXPPPRPPAXXXP 701
           L PPP     PPR P    P
Sbjct: 735 LPPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 760 LAPPPXXTXPPPRPPAXXXP 701
           L PPP     PPR P    P
Sbjct: 627 LPPPPHPHHQPPRNPVGTNP 646


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
 Frame = -1

Query: 300 PPPPPLXXXXXXFXPXP--PPSXXPPXXAPS 214
           P  PP       + P P  PP   PP  AP+
Sbjct: 162 PALPPAGFLCNNYLPLPQVPPLPLPPIFAPT 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.309    0.156    0.512 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,428
Number of Sequences: 336
Number of extensions: 3698
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30619809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)