Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F07
         (1068 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    29   0.093
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   6.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 0.093
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +3

Query: 726 GGGXVXXGGGAXXXXXGGGXXXGXGGGGGXGGXGGXGG 839
           GG      GG      GG    G   GGG GG G   G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 291 GGGGGGXGXXGG 326
           GGGGGG G   G
Sbjct: 46  GGGGGGLGIASG 57


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 315 PPXXPPPPPP 286
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 315 PPXXPPPPPP 286
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.156    0.512 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,508
Number of Sequences: 438
Number of extensions: 11828
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35668296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)