Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F06
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    31   0.21 
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   2.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.5  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    27   4.6  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   4.6  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   6.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   8.0  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 701 RFQXFHIGSKELLPESFSNALLKSELRVIFGSPMLSHVNVSGW 573
           +F  FH G  EL+P+   N   + EL ++ G   +S +++  W
Sbjct: 617 QFNAFHEGFSELIPQELINVFDERELELLIGG--ISEIDMEDW 657


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 479 VKDFDCSVNSITMSPTICKSAFVFSSTVFALV 384
           VKDF C  N+I+M   + K+   F S+VF+L+
Sbjct: 563 VKDFVCGANTISMQWNLQKN-MEFISSVFSLI 593


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 436 GDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKND 546
           G IVI L +  +S   L+  D   I  + YG  +  D
Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 96  RSHFDVP*SLMRN*HRTQILR 34
           R  FD+  SL RN H+T+ILR
Sbjct: 63  RKRFDLQDSLSRNSHKTRILR 83


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 986

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 472  SFTGLYTADTNVIGAVRYGYNLKNDDNGV---QHFEVQPETFTCESIGEPKITLSSDLSS 642
            + T +Y+ D+ ++ +V+    L +  N +      ++ PE ++  S+GE  + L S+   
Sbjct: 836  AMTKIYSFDSPLLDSVQVKGELISHSNRIITRSQSKLHPEEYSYVSVGEKILRLLSEEFV 895

Query: 643  ALEKDS 660
            +L KD+
Sbjct: 896  SLSKDA 901


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 574 QPETFTCESIGEPKITLSSDLSSALEK 654
           +P+TF C+S  EP   ++S L    EK
Sbjct: 684 EPQTFNCDSFNEPGTEITSFLYDFDEK 710


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +1

Query: 457 TEQSKSFTGLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKITLSSDL 636
           T  + S++  Y+  T + G+  YG  + + D+  + F   PE+  C+    P   L S +
Sbjct: 48  TRHNPSWSHPYSV-TWLNGSSYYGLAISHIDDSQRVFGPDPESVPCQYYFNP-AGLYSII 105

Query: 637 SSALEKDSGN 666
            SA E  SGN
Sbjct: 106 ISAREFASGN 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,419,449
Number of Sequences: 5004
Number of extensions: 70719
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)