Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F06
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    30   2.5  
Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical p...    29   5.7  
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    29   5.7  
Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   10.0 
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
            class iii (c) protein1 protein.
          Length = 1400

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 431  ICKSAFVFSSTVFALVSIWKSDICWFFKPVMFKFLKRITIP-ASLGAITSNDV 276
            ICK+   + +++ A   + K+ +C F +   +K  + IT P  ++GAI +  +
Sbjct: 1002 ICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSI 1054


>Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical
           protein T05E12.1 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 365 ICWFFKPVMFKFLKRITIPASLGAITSNDVTTSGSIGHMSYCGIPLLVFSKNC 207
           I +    +M+  L  +T+P  +    S  + +SG   H  Y G PL+  +  C
Sbjct: 43  ISFSLSAMMYSVLDFLTLPIFVCKERSFCIVSSGMFTHDKYIGFPLIATTSGC 95


>Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical
           protein F15A4.3 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 455 NSITMSPTICKSAFVFSSTVFALVSIWKSDICWFFKPVMFKF 330
           N   +  T  +S F+ S  VF  + +W+ ++ W  + V  KF
Sbjct: 192 NRTPLLQTCLQSIFIGSVAVFGYIMLWRVNLAWRNRIVNLKF 233


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
            pathway homologprotein 1 protein.
          Length = 1451

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 481  GLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQPETFTCESIG-EPKITLSSDLSSALEKD 657
            G  TA+T  + A+ YG      DNG + + +     T  S G  PK+   +DLS    K 
Sbjct: 1299 GANTANTKKVAALVYGIGKIRMDNGARLYAI-----TRPSTGRSPKLMTMADLSKRFHKV 1353

Query: 658  SGNNSLEPIW 687
            S + + E +W
Sbjct: 1354 SIDEAKE-VW 1362


>Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical
           protein Y48E1B.5 protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 193 SSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSD 306
           SS   Q L K     P  DI+PI P++  S+D I   D
Sbjct: 313 SSIFHQKLSKIFSAEPLPDIYPISPVIDFSMDTIYNDD 350


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 514 AVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKITLSSDLSSALEKDSG 663
           A R G + +N++  V H    PET  CE +   ++ +  +    L+   G
Sbjct: 468 AARPGTSCQNEEECVDHSYCSPETNKCECMKASQMVIGGECRERLKAHPG 517


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 514 AVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKITLSSDLSSALEKDSG 663
           A R G + +N++  V H    PET  CE +   ++ +  +    L+   G
Sbjct: 468 AARPGTSCQNEEECVDHSYCSPETNKCECMKASQMVIGGECRERLKAHPG 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,715,856
Number of Sequences: 27780
Number of extensions: 396333
Number of successful extensions: 957
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)