Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F05
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    29   3.4  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    28   7.8  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    28   7.8  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    28   7.8  

>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 521 KRQQRGLFTVXGLLLAFCSHVLSCV-IPLILWITVL 417
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 521 KRQQRGLFTVXGLLLAFCSHVLSCV-IPLILWITVL 417
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 521 KRQQRGLFTVXGLLLAFCSHVLSCV-IPLILWITVL 417
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform a
            protein.
          Length = 2322

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = +1

Query: 541  LTSITKIDAQVRXGETRQDYKDTRRFPWKAPSCALLFRXXRLPDTCPPFSLRGSVALSHS 720
            LT   K++  V       D+    RF +   + +   R   L D    FS  G++ALS  
Sbjct: 1032 LTKFEKLNNTVNEKRQVVDWSARERFQFVESAFSQTMRRTELLDIQKDFSAMGALALSAD 1091

Query: 721  SRCXYLS 741
            S C   S
Sbjct: 1092 SSCKLYS 1098


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform b
            protein.
          Length = 2019

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = +1

Query: 541  LTSITKIDAQVRXGETRQDYKDTRRFPWKAPSCALLFRXXRLPDTCPPFSLRGSVALSHS 720
            LT   K++  V       D+    RF +   + +   R   L D    FS  G++ALS  
Sbjct: 1032 LTKFEKLNNTVNEKRQVVDWSARERFQFVESAFSQTMRRTELLDIQKDFSAMGALALSAD 1091

Query: 721  SRCXYLS 741
            S C   S
Sbjct: 1092 SSCKLYS 1098


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-mediated
            mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = +1

Query: 541  LTSITKIDAQVRXGETRQDYKDTRRFPWKAPSCALLFRXXRLPDTCPPFSLRGSVALSHS 720
            LT   K++  V       D+    RF +   + +   R   L D    FS  G++ALS  
Sbjct: 1032 LTKFEKLNNTVNEKRQVVDWSARERFQFVESAFSQTMRRTELLDIQKDFSAMGALALSAD 1091

Query: 721  SRCXYLS 741
            S C   S
Sbjct: 1092 SSCKLYS 1098


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,986,522
Number of Sequences: 27780
Number of extensions: 318010
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)