Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F04
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    25   1.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    25   1.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.9  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 273 CVGALIQTCHCNDGLVFNADRKCVPISDC 359
           C+      C C  G + N  + CVP S C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 273 CVGALIQTCHCNDGLVFNADRKCVPISDC 359
           C+      C C  G + N  + CVP S C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 262 VRYGSSQVLTPGVISPMGIFRASIFGSAGLESHHGD 155
           +R+ S+  + P VIS +GI   +    A L  HH D
Sbjct: 509 IRWNSAFAIAPAVISCLGI--VATMAVACLLFHHRD 542


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 262 VRYGSSQVLTPGVISPMGIFRASIFGSAGLESHHGD 155
           +R+ S+  + P VIS +GI   +    A L  HH D
Sbjct: 599 IRWNSAFAIAPAVISCLGI--VATMAVACLLFHHRD 632


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 281 ADASGVSQVRVVAGPHARGHQSNGHFQGIH 192
           A A+ V    +V+ P +  HQ  G   G+H
Sbjct: 380 AVAAAVQSSSIVSSPDSARHQRIGGCNGLH 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,333
Number of Sequences: 438
Number of extensions: 4707
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)