Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_F02
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    28   1.5  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    27   2.6  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   3.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   4.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.9  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    26   7.8  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 264 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIP 443
           D G+E +E NRR  +  +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 444 GIK 452
            ++
Sbjct: 552 PLR 554


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 650 RLHLSEPAHRARLSSPEVLPD 712
           R+HL+EPA R  ++ P  +PD
Sbjct: 360 RIHLAEPAARDEVARPACIPD 380


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 321 SSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT 500
           S +A    NI GV+    +  ++  + + L +L EK G    I          GSE   +
Sbjct: 349 SYNASFLVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSS 399

Query: 501 -TQGLDDLAQRCAQYKKDGCHFAKW 572
            T+   D+A+  A + K+G +F+ W
Sbjct: 400 ITEKTRDIAKNVATWLKNGENFSSW 424


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 150 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 314
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 577 AC*RSAATPPRTKLSRXTLMCSPATPPSVRASASCPIVEPRSLT*WRARPGPRP 738
           +C  S + PP    S  +   +P  PP+  +S S PI  P S +       P P
Sbjct: 114 SCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPI-PPTSTSSTDTNSNPLP 166



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 577 AC*RSAATPPRTKLSRXTLMCSPATPPSVRASASCPIVEPRSLT*WRARPGPRP 738
           +C  S + PP    S  +   +P  PP+  +S S PI  P S +       P P
Sbjct: 171 SCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPI-PPTSTSSTDTNSSPLP 223


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 678 VPDCRAPKSYLMAS 719
           VPDCRAP +Y+ A+
Sbjct: 58  VPDCRAPNAYVEAA 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,315
Number of Sequences: 5004
Number of extensions: 68064
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)