Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_F01
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.024
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.22
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.89
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.89
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 1.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 8.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.024
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 594 PXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPPXP 698
P PPPA P P P P P P P PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/48 (29%), Positives = 15/48 (31%)
Frame = +3
Query: 555 PQXPXXXTXPPTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPPXP 698
P P P P P P + PPP P P PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 596 PXPPPGXXHXXSXPXPPPXRPP 661
P PPP + P PPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +3
Query: 555 PQXPXXXTXPPTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPPXPKQXP 710
P P PT P P + PPP P P PP P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP-PPPPGVAGAGPPPPPPPP 782
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.22
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +3
Query: 585 PTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
PT P PP A P L P PP +P P PP
Sbjct: 418 PTPPSLPPSAP--PSLPPSAPPSLPMGAPAAPPLPP 451
Score = 29.5 bits (63), Expect = 0.67
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +3
Query: 564 PXXXTXPPTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPPXP 698
P PP+ P PP P P PP P P P P P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPA-APAPPPAPAPAPAAP 487
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 596 PXPPPGXXHXXSXPXPPPXRPPXPXTPXAXXPXT 697
P PPP S P PP R P P P T
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +3
Query: 564 PXXXTXPPTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPPXPKQXP 710
P P P PP A P L P P P P PP P P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPL-PAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +3
Query: 582 PPTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPPXPKQXP 710
PP+ P P A P P PP +P P PP P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPP-LPAGMPAAPPLPPAAPAPP 477
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = +2
Query: 590 TTPXPPPGXXHXXSXPXPPPXRPPXPXTPXAXXP 691
+ P PPP PP PP P P + P
Sbjct: 249 SAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +3
Query: 549 TFPQXPXXXTXPPTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
+ P P + PP PPP P PPP P PP
Sbjct: 350 SIPLPPQGRSAPP-----PPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +3
Query: 546 TTFPQXPXXXTXPPTQPXXPPPAXXTPXLXPXPPP--XVPXNPXHRXPXPPXP 698
T+ P + P ++P P+ P P PPP +P + P P P
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Frame = +3
Query: 555 PQXPXXXTXPPTQPXXP--PPAXXTPXLXPXPPPXVP 659
P P P P P PPA P P P P P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.89
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +3
Query: 546 TTFPQXPXXXTXPPTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPPXP 698
+T P P P PPP P + PPP P P PP P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPP----PPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = +3
Query: 582 PPTQPXXP-PPAXXTPXLXPXPPPXVPXNPXHRXPXPPXPKQXP 710
PP +P PP P P PPP P P P P P
Sbjct: 1690 PPVRPQSAAPPQMSAPT--PPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 576 TXPPTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPPXP 698
T PP PPP P P PP P P P P
Sbjct: 1706 TPPPPPMSVPPPPSAPP--MPAGPPSAPPPPLPASSAPSVP 1744
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.89
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Frame = +3
Query: 582 PPTQPXXP----PPAXXTPXLXPXPPPXVPXNPXHRXP 683
PP QP P P A P P PP VP P + P
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +3
Query: 564 PXXXTXPPTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPPXPKQXP 710
P PPT P P PPP P PP P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 584 PHTTPXPPPGXXHXXSXPXPPPXRPPXPXTPXAXXP 691
PHT P P H + PPP P +P A P
Sbjct: 171 PHTRPPHHPPHPHFHNNNYPPPYCFQSPVSPGATVP 206
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 582 PPTQPXXPPPAXXTPXLXPXPPP 650
P P PPP P P PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 612 AXXTPXLXPXPPPXVPXNPXHRXPXPPXP 698
A P P PPP P + P PP P
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 582 PPTQPXXPPPAXXTPXLXPXPPP 650
PP P PPP P P PPP
Sbjct: 9 PPPPP--PPPGFEPPSQPPPPPP 29
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 585 PTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
P + PPP P PPP + P P PP
Sbjct: 203 PGEHMPPPPMHHKPG-EHMPPPPMHHEPGEHMPPPP 237
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 585 PTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
P + PPP P PPP + P P PP
Sbjct: 216 PGEHMPPPPMHHEPG-EHMPPPPMHHEPGEHMPPPP 250
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 585 PTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
P + PPP P PPP + P P PP
Sbjct: 229 PGEHMPPPPMHHEPG-EHMPPPPMHHEPGEHMPPPP 263
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 585 PTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
P + PPP P PPP + P P PP
Sbjct: 242 PGEHMPPPPMHHEPG-EHMPPPPMHHEPGEHMPPPP 276
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 585 PTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
P + PPP P PPP + P P PP
Sbjct: 255 PGEHMPPPPMHHEPG-EHMPPPPMHHEPGEHMPPPP 289
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 585 PTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
P + PPP P PPP + P P PP
Sbjct: 268 PGEHMPPPPMHHEPG-EHMPPPPMHHEPGEHMPPPP 302
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 585 PTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
P + PPP P PPP + P P PP
Sbjct: 281 PGEHMPPPPMHHEPG-EHMPPPPMHHEPGEHMPPPP 315
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 585 PTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
P + PPP P PPP + P P PP
Sbjct: 294 PGEHMPPPPMHHEPG-EHMPPPPMHHEPGEHMPPPP 328
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 585 PTQPXXPPPAXXTPXLXPXPPPXVPXNPXHRXPXPP 692
P + PPP P PPP + P P PP
Sbjct: 307 PGEHMPPPPMHHEPG-EHMPPPPMHHEPGEHMPPPP 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.140 0.459
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,247,342
Number of Sequences: 5004
Number of extensions: 13274
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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