Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E24
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0123 + 12104187-12104252,12105455-12105775 35 0.077
06_02_0122 - 12095385-12095713,12096018-12096120 32 0.54
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 31 0.95
03_06_0471 + 34169562-34169892,34170121-34170347 31 0.95
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 1.7
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 2.2
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 30 2.9
06_01_0145 + 1092764-1093351 29 5.1
02_04_0382 - 22501041-22501279,22501717-22501810 29 5.1
02_05_0149 + 26290236-26290880 29 6.7
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 28 8.8
>06_02_0123 + 12104187-12104252,12105455-12105775
Length = 128
Score = 35.1 bits (77), Expect = 0.077
Identities = 20/60 (33%), Positives = 24/60 (40%)
Frame = -1
Query: 898 GYPXGFGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
GY G+GG G P + G G R G G G + G GG G GG+G
Sbjct: 50 GYGGGYGGGYGRPGYGGGYGGGYGYPRYGGGYGGGYGCGYGGGYGGYGGGYGGGYGGGYG 109
>06_02_0122 - 12095385-12095713,12096018-12096120
Length = 143
Score = 32.3 bits (70), Expect = 0.54
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = -1
Query: 898 GYPXGFGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
GY G+GG G P + G G G G G + G GG G GG+G
Sbjct: 65 GYGGGYGGEYGRPGYGGGYGGGYGHPGYGGGYGGGYGRGYGGGYGGSGGGYGGGYGGGYG 124
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 31.5 bits (68), Expect = 0.95
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -1
Query: 892 PXGFGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEG--GXQXGKXPFSRGGWG 719
P GFGG G F G+ G GR G G F E G G + G+ P GG G
Sbjct: 1063 PGGFGGREGPVGFGGQESPG---GFGGRKGPGAFEGREGAAPGSFGGRGGRGPGGFGGRG 1119
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = -1
Query: 892 PXGFGGXPGXPPFXGEXXXGLXAXRXGRGG----XGXFSXGEEKXEGGXQXGKXP 740
P GFGG G F G G R G GG G G ++ GG K P
Sbjct: 1036 PGGFGGRDGPGGFGGRDGPGGFIGREGPGGFGGREGPVGFGGQESPGGFGGRKGP 1090
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 31.5 bits (68), Expect = 0.95
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 131 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 280
Y P P PP Y P+ GY P GAY +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 131 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 289
Y P + P V PP Y P +G P N + Y + P GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +2
Query: 119 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 274
QG Y+P R PP+ P Y P G Y +PQG+PY P P+
Sbjct: 246 QGETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 199 AVSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYH 44
A I +++G ++D ++F+ +S QS+DEN + H + +YH
Sbjct: 985 ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYH 1036
>06_01_0145 + 1092764-1093351
Length = 195
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = -1
Query: 898 GYPXGFGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEG--GXQXGKXPFSRGG 725
G P G GG G G G R GRGG G S G +G G + G RGG
Sbjct: 120 GGPGGIGGRGGDGGCGGVGGRGRKGGRGGRGGRGG-SGGFGGGDGGRGGRGGDGGEGRGG 178
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +2
Query: 74 FFMIFVLALLAMAN-AQGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDR 238
F ++ A +A A +G P ++ + PP D P+ + Y+P + YY D
Sbjct: 16 FALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DP 74
Query: 239 PQGRPYFKPTPFPGARGG 292
P Y+ P P P GG
Sbjct: 75 PPSPDYYDPPPSPYYGGG 92
>02_05_0149 + 26290236-26290880
Length = 214
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = -1
Query: 898 GYPXGFGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
G+P GFGG G G G G GG G + G GG G GG+G
Sbjct: 125 GHPGGFGGGGGGGGGGGGRNYG--GGSGGIGGYGNYGGGYNGEPGGGGGGAG--EGGGYG 180
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = -1
Query: 895 YPXGFGGXPGXPPFXGEXXXGLXAXRXG-RGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
YP +G P PP+ G G + GG G G GG P+ GG G
Sbjct: 350 YPPSYGAPPPNPPYSGGAPGGQGSLPPSYDGGYG----GRPMPGGGGPGAPPPYHGGGGG 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,278,321
Number of Sequences: 37544
Number of extensions: 445912
Number of successful extensions: 1012
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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