Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E24
(904 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 36 0.040
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 35 0.069
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 35 0.069
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 33 0.28
U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 30 2.6
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 2.6
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 2.6
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 2.6
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 3.4
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 4.5
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 4.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.5
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 29 6.0
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 29 6.0
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 29 6.0
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 29 6.0
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 35.9 bits (79), Expect = 0.040
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 96 LCWLWPTLKETATNLLTTARTSLILPKTTT---LMETATNLSTTVHITWTVPKADLTSSL 266
LC+LW L T T TT T+ + TTT + T T T T TVP T+++
Sbjct: 179 LCYLWVPLTTTTTTTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLNGTTTTV 238
Query: 267 P 269
P
Sbjct: 239 P 239
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 35.1 bits (77), Expect = 0.069
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 108 WPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSL 266
WP ET TT T+ +P TTT+ T T +T T T A T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 35.1 bits (77), Expect = 0.069
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 108 WPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSL 266
WP ET TT T+ +P TTT+ T T +T T T A T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +3
Query: 111 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 260
PT + T T TT T+ P TTT ET T +TT T T P T+
Sbjct: 112 PTTETTTTPTTTTPTTTTTTPTTTTT-ETTTTPTTTTTETTTTPTTTTTT 160
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 114 TLKETATNLLTTARTSLILPKTTTLMETATNLS-TTVHITWTVPKADLTSS 263
T T T TT T+ P TTT T T + TT T T P + T++
Sbjct: 69 TTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTT 119
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 114 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHI-TWTVPKADLTSSLPLS 275
T T T TT T+ +P TTT T T +TT T T P T + S
Sbjct: 198 TTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTS 252
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +3
Query: 111 PTLKETA-TNLLTTARTSLILPKTTTLM-ETATNLSTTVHITWTVPKADLTS 260
PT TA T TT T+ P TTT + T T TT T T P T+
Sbjct: 189 PTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTT 240
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +3
Query: 114 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 260
T T T TT T+ P TTT T TT T T P T+
Sbjct: 83 TTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTTT 131
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 33.1 bits (72), Expect = 0.28
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -1
Query: 880 GGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKX---EGGXQXGKXPFSRGGWGD 716
GG G + G+ G + G GG G GE+ +GG Q G S+GGWG+
Sbjct: 176 GGSQGG--WGGQNGGGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGN 231
>U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical
protein C30G12.1 protein.
Length = 469
Score = 31.5 bits (68), Expect = 0.85
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +3
Query: 111 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 275
P K+ N+ TT I TTT M T T ST + T T P+ ++P S
Sbjct: 275 PEKKKEVFNVFTTKTNPQI---TTTTMTTTTRTSTAIPTTTTTPRQISLQTIPFS 326
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 114 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVP 242
T T T TT+ T+ P TTT T STT T T P
Sbjct: 60 TTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTP 102
>Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical
protein F33E2.7 protein.
Length = 174
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 114 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS-SLPLSLV 281
T T T TT T+ P TTT T T +TT T T P T+ S PL+ V
Sbjct: 90 TTTTTPTTTTTTPTTTTTTPTTTTTTPTTT--TTTPTTTTTTPTTTTTTRSTPLTEV 144
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 898 GYPXGFGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
GY +GG G G+ G + G GG G G + GG Q + +GGWG
Sbjct: 251 GYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQ----QGGWG 306
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 898 GYPXGFGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
GY +GG G G+ G + G GG G G + GG Q + +GGWG
Sbjct: 213 GYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQ----QGGWG 268
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 898 GYPXGFGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
GY +GG G G+ G + G GG G G + GG Q + +GGWG
Sbjct: 251 GYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQ----QGGWG 306
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 126 TATNLLTTARTSLILPKTTTLMETATNLSTTVHIT--WTVPKADLTSSLP 269
T T TT T+ P TTT T T +TT+ T T P T++ P
Sbjct: 304 TETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTTPTTTATTTKP 353
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 126 TATNLLTTARTSLILPKTTTLMETATNL-STTVHITWTVPKADLTSS 263
T T TT TS P TTT T T STT T T+ T++
Sbjct: 297 TTTESTTTETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTT 343
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/58 (31%), Positives = 19/58 (32%)
Frame = -1
Query: 892 PXGFGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
P G+GG PG G G G G G G GG G G WG
Sbjct: 22 PGGWGGGPGRWGGWGGNRWGGGGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWG 79
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 814 GRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
GRGG G G GG G + GGWG
Sbjct: 95 GRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWG 126
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +3
Query: 120 KETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLAVGSK 299
KET T+L T PKTTT++ ++T ST +T +A T++ P + V +K
Sbjct: 442 KETTTSLATEQ------PKTTTIVASSTETST---VTTDATEATTTTTAPTTTVATTTTK 492
Query: 300 E 302
+
Sbjct: 493 K 493
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 111 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 260
P+ T T + +T+ T TTTL + + STT T TV + TS
Sbjct: 407 PSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTS 456
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 111 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 260
P+ T T + +T+ T TTTL + + STT T TV + TS
Sbjct: 407 PSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTS 456
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = -1
Query: 886 GFGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGG--WGD 716
GFGG G + G GRGG G G+ GG + G RGG W D
Sbjct: 93 GFGGSRGGGGYDGGRGGSRGGYDGGRGGYG----GDRGGRGGGRGGYDGERRGGSRWDD 147
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 111 PTLKETATNLLTTARTSLILPKTTTLMET--ATNLSTTVHITWTVPKADLTSSLPLSLVL 284
PT+ T T ++TT T + +P T + T TN ST V TV T S V+
Sbjct: 361 PTVATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVVTAPSTVVTVPTTVMTSRSTVI 420
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = -1
Query: 886 GFGGXPG-XPPFXG--EXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWGD 716
GFGG G PPF G G + G GG FS G + G Q G ++G G
Sbjct: 63 GFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFS-GAPQGFGNNQQGGFGGNQGNQGG 121
Query: 715 F 713
F
Sbjct: 122 F 122
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = -1
Query: 898 GYPXGFGGXPG-XPPFXG--EXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRG 728
G GFGG G PPF G G + G GG FS + G Q G ++G
Sbjct: 117 GNQGGFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSEAPQGF-GNNQQGGFGGNQG 175
Query: 727 GWGDF 713
G F
Sbjct: 176 NQGGF 180
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = -1
Query: 886 GFGGXPG-XPPFXG--EXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWGD 716
GFGG G PPF G G + G GG FS G + G Q G ++G G
Sbjct: 84 GFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFS-GAPQGFGNNQQGGFGGNQGNQGG 142
Query: 715 F 713
F
Sbjct: 143 F 143
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = -1
Query: 898 GYPXGFGGXPG-XPPFXG--EXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRG 728
G GFGG G PPF G G + G GG FS + G Q G ++G
Sbjct: 138 GNQGGFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSEAPQGF-GNNQQGGFGGNQG 196
Query: 727 GWGDF 713
G F
Sbjct: 197 NQGGF 201
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = -1
Query: 886 GFGGXPG-XPPFXG--EXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWGD 716
GFGG G PPF G G + G GG FS G + G Q G ++G G
Sbjct: 69 GFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFS-GAPQGFGNNQQGGFGGNQGNQGG 127
Query: 715 F 713
F
Sbjct: 128 F 128
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = -1
Query: 898 GYPXGFGGXPG-XPPFXG--EXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRG 728
G GFGG G PPF G G + G GG FS + G Q G ++G
Sbjct: 123 GNQGGFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSEAPQGF-GNNQQGGFGGNQG 181
Query: 727 GWGDF 713
G F
Sbjct: 182 NQGGF 186
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -1
Query: 883 FGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
+GG G + G G RGG G + G+ GG + RGG+G
Sbjct: 671 YGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDR---GRGGYG 722
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -1
Query: 883 FGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
+GG G + G G RGG G + G+ GG + RGG+G
Sbjct: 712 YGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDR---GRGGYG 763
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 814 GRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWGDF 713
GRG G G+ G + G+ F RGG G F
Sbjct: 152 GRGRGGRGRGGDRGGRGSDRGGRGGFGRGGGGGF 185
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -1
Query: 883 FGGXPGXPPFXGEXXXGLXAXRXGRGGXGXFSXGEEKXEGGXQXGKXPFSRGGWG 719
+GG G + G G RGG G + G+ GG + RGG+G
Sbjct: 671 YGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDR---GRGGYG 722
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,165,573
Number of Sequences: 27780
Number of extensions: 360626
Number of successful extensions: 1152
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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