Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E23
(916 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac... 27 2.8
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 26 6.5
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 6.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 8.6
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 8.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 8.6
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 8.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 8.6
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 8.6
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 26 8.6
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 8.6
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 8.6
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 8.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 8.6
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 8.6
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 8.6
>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
Fba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 440 EXAHVSHSKVLEXPGTDVDVYCEMSTSVPRXYITEQF 550
+ +HVSH+++ P DVY E+S+ P I F
Sbjct: 185 DNSHVSHTELYTQPEDIWDVYRELSSVTPYFSIAAAF 221
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +2
Query: 383 STSPSPKLRKPMPNSITSSEXAHVSHSKVLEXPGTDVDVYCEMSTSVPR 529
ST+ PK++KP+P + +S P T+++ + + PR
Sbjct: 362 STTTQPKVQKPVPKAFQPKVPMEISPFSGELVPATELEEHMRLKLLDPR 410
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 740 LXTARFVTYTWTLSDLTYSDST 805
L + F TYTW L D +Y D T
Sbjct: 387 LQSMYFTTYTWILYDWSYRDWT 408
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 362 SSMRERVSATTLSLPGNVADVGYIQVSTHQQSIRPGIEPERRPATSKA 219
SS +ER AT LSL G + + V T +Q + ++ PA+S +
Sbjct: 397 SSAKERPKATQLSLEGALGKIAVNTVRTPRQLL--NVKRPTEPASSNS 442
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 279 PPTVDTSRNRTRTASSHKQSDVGKLNETIREIVIYYDNTIHYR 151
P TS + + A S K+ +++ I E V YD++ H R
Sbjct: 97 PHKKSTSTSTRKRARSSKKKATDSVSDKIDESVASYDSSTHLR 139
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 586 VXPGXXXTIKLITXRFVXXSIXKDCSKWAKECPKCQ 693
+ PG +I RF I K ++ + C CQ
Sbjct: 926 IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,008
Number of Sequences: 5004
Number of extensions: 68133
Number of successful extensions: 204
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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