Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E23
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0240 - 1822086-1822216,1822311-1822367,1822788-1822842,182...    30   2.9  
01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471...    28   9.0  

>06_01_0240 -
           1822086-1822216,1822311-1822367,1822788-1822842,
           1824585-1824674,1824848-1824995,1825095-1825351
          Length = 245

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 383 STSPSPKLRKPM-PNSITSSEXAHVSHSK 466
           S+SPSP+L  PM P+S +SS  A   HSK
Sbjct: 17  SSSPSPRLALPMNPSSSSSSRGAASYHSK 45


>01_04_0103 +
           16046012-16046018,16046214-16046366,16046908-16047158,
           16047509-16047631,16047818-16047931,16048153-16048315,
           16048867-16049462
          Length = 468

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -1

Query: 424 VRHRFSELGRGTGTLASQLLPLRCGK--ECQRLRCLCPGM*RMSVI-FRYQPTNSRYVQE 254
           VR RFS    G G++AS++      K  E     C+ PG  +  +I    QP  S   ++
Sbjct: 199 VRLRFSSTNDGNGSVASEVHCHHDAKTSETPISLCIYPGENQELIIKSMVQPAKSHTGKQ 258

Query: 253 SNPNGVQP 230
           S+P G  P
Sbjct: 259 SSPTGGHP 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,725,087
Number of Sequences: 37544
Number of extensions: 449285
Number of successful extensions: 1164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)