Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E23
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    29   6.1  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    29   6.1  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    29   6.1  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    24   7.0  

>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +1

Query: 661  SKWAKECPKCQRCRCINTQQH--LCPS*TXYCSFRHVHMDII 780
            S W    P+C+RC C  T+ +   C   T  C  +  H   I
Sbjct: 1799 SGWWGTFPRCRRCSCAQTKDYEAQCDKKTGACQCKKSHFSTI 1840


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +1

Query: 661  SKWAKECPKCQRCRCINTQQH--LCPS*TXYCSFRHVHMDII 780
            S W    P+C+RC C  T+ +   C   T  C  +  H   I
Sbjct: 1799 SGWWGTFPRCRRCSCAQTKDYEAQCDKKTGACQCKKSHFSTI 1840


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +1

Query: 661  SKWAKECPKCQRCRCINTQQH--LCPS*TXYCSFRHVHMDII 780
            S W    P+C+RC C  T+ +   C   T  C  +  H   I
Sbjct: 1818 SGWWGTFPRCRRCSCAQTKDYEAQCDKKTGACQCKKSHFSTI 1859


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 23.8 bits (49), Expect(2) = 7.0
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 249  TRTASSHKQSDVG-KLNETIREIVIYYDNTIHYRLLTN*RDTKQTTNKYVNL 97
            ++T  +  Q  +G K +  I+E + YY NT H  ++    +T  T+  YV +
Sbjct: 6792 SKTKQTISQVAMGTKSSGDIKEALEYYQNTYH-TIIPYDSETGNTSPSYVRI 6842



 Score = 22.6 bits (46), Expect(2) = 7.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 369  SYLFDAGKSVSDYVVFARECSGCRLYSGIN 280
            ++LF+ GKS    V  A +C   R++   N
Sbjct: 6730 NHLFEIGKSTPLRVRVAEDCDNSRIHIVFN 6759


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,713,596
Number of Sequences: 27780
Number of extensions: 409552
Number of successful extensions: 1080
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)