Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E22
         (1176 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.8  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   2.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.8  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   6.4  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   8.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   8.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   8.4  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXP 813
           PPPPP     P  PP P      P P   P
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP     P  PP P        P   PP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP     P  PP P        P   PP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790



 Score = 29.1 bits (62), Expect = 6.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP        PP P      P   G PP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXP 813
           PPPPP     P  PP P      P P   P
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP     P  PP P        P   PP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP     P  PP P        P   PP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790



 Score = 29.1 bits (62), Expect = 6.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP        PP P      P   G PP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXP 813
           PPPPP     P  PP P      P P   P
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP     P  PP P        P   PP
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP     P  PP P        P   PP
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373



 Score = 29.1 bits (62), Expect = 6.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP        PP P      P   G PP
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP 326


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 724  PPPPPXXXXXPXXPPXPXXXXXXPXPXGXP 813
            PPPPP     P  PP P        P G P
Sbjct: 1344 PPPPPSDDLTPVPPPPPPPPTMSKAPTGVP 1373


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPP      P  PP P      P   G PP
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318



 Score = 29.1 bits (62), Expect = 6.4
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXP 813
           PPPPP     P  PP P      P P G P
Sbjct: 287 PPPPPSSGMWP--PPPPPPPGRTPGPPGMP 314



 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
 Frame = +1

Query: 721 YPP-PPPXXXXXPXXPPXPXXXXXXPXPXGXP 813
           YPP PPP     P  PP P      P P   P
Sbjct: 260 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPP 291


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPP      P  PP P      P   G PP
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328



 Score = 29.1 bits (62), Expect = 6.4
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXP 813
           PPPPP     P  PP P      P P G P
Sbjct: 297 PPPPPSSGMWP--PPPPPPPGRTPGPPGMP 324



 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
 Frame = +1

Query: 721 YPP-PPPXXXXXPXXPPXPXXXXXXPXPXGXP 813
           YPP PPP     P  PP P      P P   P
Sbjct: 270 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPP 301


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 727 PPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPP     P  PP P      P P G PP
Sbjct: 707 PPPPGIPGYPPAPPPP--GVGPPPPQGIPP 734


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP     P  PP        P P G PP
Sbjct: 280 PPPPPAGGSPP--PPRAGSPPPPPPPRGSPP 308


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP     P  PP        P P G PP
Sbjct: 301 PPPPPAGGSPP--PPRAGSPPPPPPPRGSPP 329


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 724 PPPPPXXXXXPXXPPXPXXXXXXPXPXGXPP 816
           PPPPP     P  PP        P P G PP
Sbjct: 286 PPPPPAGGSPP--PPRAGSPPPPPPPRGSPP 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,936
Number of Sequences: 27780
Number of extensions: 253475
Number of successful extensions: 824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3213813064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)