Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E21
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.1  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   1.1  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    27   3.4  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.9  

>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 581 VLRFSVFCWKHSGPPSAMNKAIRSPFLVAHK 489
           ++R S++   HS  PS++++ +  PFL  HK
Sbjct: 333 LVRHSIYVSIHSREPSSLSRKLAPPFLRTHK 363


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +3

Query: 207 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN--GALDEVFKKYCDKSAQ 380
           T+N+   K+  ++ ++++F  CL    +LN LK+ + +   +   A  +V  +Y  KS  
Sbjct: 40  TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRVGDRIRDYASASKQVQNEYHQKSNH 96

Query: 381 LKGCISSVLQ 410
           L+   + VL+
Sbjct: 97  LREKFAQVLE 106


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 45  GSVLTWNP-SACPTFRSRTSFLVTMMWKTVLITIFAAGVLADDFSQITAVVTS 200
           GS+  W   SA P F    SFLV   W T   T F A +     + I A V++
Sbjct: 141 GSIYLWAAESAGPRFGRFVSFLVAW-WSTTAWTTFVASITQSTANFIFAEVST 192


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 378 QLKGCISSVLQGVRPCVG---NDYANHINDAQNSTNQLIDFVCYKE 506
           +L   I+  L  ++P +    N Y  HI  +  +  +L  F CYKE
Sbjct: 53  KLTKAITEYLSNLKPQLSKQENIYVKHIKSSNEAKTELEIFNCYKE 98


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/58 (20%), Positives = 27/58 (46%)
 Frame = +3

Query: 351 FKKYCDKSAQLKGCISSVLQGVRPCVGNDYANHINDAQNSTNQLIDFVCYKERRPDCF 524
           FK Y D +  L    +  +     C+ ++Y   +  + +S++Q    + Y+E + + F
Sbjct: 13  FKFYIDTALLLN---AEFISSFTNCINSEYNGKVKISYSSSSQQFKVIVYEEHKREAF 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,312,818
Number of Sequences: 5004
Number of extensions: 64474
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)